BAC Information

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BAC

Clone NameMSMg01-431I23
Chromosome10 (Build37)
Map Location 101,617,811 - 101,828,619
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I23.T7 (MSMg01no431_i23.b1)MSMg01-431I23.TJ (MSMg01no431_i23.g1)
ACCAG523790AG523791
length762786
length of high quality
(start - end)		457 (63 - 519)344 (67 - 410)
definitionCHROMAT_FILE: MSMg01no431_i23.b1 PHD_FILE: MSMg01no431_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005CHROMAT_FILE: MSMg01no431_i23.g1 PHD_FILE: MSMg01no431_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,828,273 - 101,828,619)(101,617,811 - 101,618,154)
sequence
GCGGCCGCTATACGACTCCTATATTTCGAGAATCCGCGGAATTCAGTGCT
GATTGCAANAACAAAATCAAACAGATCATTTTCTGTTTGTGTTTAATGAG
ATCCACTTGGGGAATTGGCACCAAAAGTGCAAGCGTGCAGTAAGGGTGAC
AAGACAGAAAGCCAGAACAAATGACTCAAGAGAGAGGTTGCGTCATGCTT
TTGGATTTATTTATTTTATATTTTTATCTATGGATGTTTTGTCTGAAAGG
GTGTTTGTGCACACGTGCAGGTCTGGTGTCCTGGGAGTCTAGGAGAAGGC
ACTTGTTCACATGGAACTAGAATCATGGATAACTATGCACCACCATGTGG
GTTCTGAAAACTGAATCCAAGTCCTCTGCAGAGTAAGTGCTCTTAATCAC
TGAGTTGGATCTCCAGACCCCAGGAGTTCTCACAGTTACTCAGTCATCAG
AAAACTAGCTCCACAAAGCCAACCTAGATCACGTCTGAATGTGGTACTCC
CAATCTTAATATCTCCTATTTGACCTCACCCCTCAGTTTCTGCAACTTCC
TCAACACTATAGCAGAGATTACTATGCTTCTAGCATATGACTCCCACAGT
AGCAAACTGCACCTGAATAATAAAAACATCATGCTTTATATAACACAAGG
AGTTTACTTTTCCTGTTTTAACAGCAGGGCCCAAAAAAAGGGAATATGCT
ATCTGGTATGAAAAAGAAACCGGGTAATAACCAGAATTACCCCTTAGGGG
GCCTCCCTTTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAGTTCTGTCTGTAAATTATCACCTGAAGGAT
ATGCTCATCTCTTGCAAAGTTAGTATTAACCCAAACCTTATTAATATGTA
AGATGAGAAACAGTGTAGGATGGTTTCTCTAGTCTAATTAGCCTCTAGTG
CTGATTTGTTTTGATAATATAAATAATTAGTTTAACCACAAAATTGATGT
AACTGAAATAATTGTCAGGCAATTAAATACTGCAGTGATTTCAGCTCTTG
GGAAATATATAGCAGGAATGTATGGTAATAAAACTGAGGGAAATGTACTT
GCTTGAAATGCAAAATTATATCAGTTTTCTAAGAAATAATTTAGCCTCCG
TATTCTTTATATTCCAACATATACTCTTATTACAGTTACTAACAATTAAA
AGCCATATTTTTTATAGTGGGTTTGCCTTCTTTATGTACCTTATCCTTTA
AATATTTTTTTGGTGCGAACTCCTTACGCTTATCGACTGTTCCTCTTTTT
ATTCAATTATCATTTTTCTCTCCTTTTAGTGCCCTTTTTTTCTTTATTTC
TTTCTTTTACCTTTCTCTCCCCCTTTCCCCACTTTTGTCTTTTTTCTCTT
CCCCCTTCCCCCCTTTCTTCTTTCTTTTGCTTGTTCGCCTTATTTCTTTT
TCTCTCTTTCGTCCTTTCCCACTTTTTTCTCTTTTTTCCCTCTTTTTCTC
TTTTTCCCTTTTCCTTGTTTTCACCTTTCTTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i23.b1 MSMg01no431_i23.b1 CHROMAT_FILE:
MSMg01no431_i23.b1 PHD_FILE: MSMg01no431_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:55 2005
         (457 letters)



>mm_chr10_101828273_101829129
          Length = 857

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatcaaacagatcattttctgtttgtgtttaatgagatccacttggggaattggcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaatcaaacagatcattttctgtttgtgtttaatgagatccacttggggaattggcacc 288

                                                                       
Query: 61  aaaagtgcaagcgtgcagtaagggtgacaagacagaaagccagaacaaatgactcaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaaagtgcaagcgtgcagtaagggtgacaagacagaaagccagaacaaatgactcaagag 228

                                                                       
Query: 121 agaggttgcgtcatgcttttggatttatttattttatatttttatctatggatgttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agaggttgcgtcatgcttttggatttatttattttatatttttatctatggatgttttgt 168

                                                                       
Query: 181 ctgaaagggtgtttgtgcacacgtgcaggtctggtgtcctgggagtctaggagaaggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgaaagggtgtttgtgcacacgtgcaggtctggtgtcctgggagtctaggagaaggcac 108

                                                                       
Query: 241 ttgttcacatggaactagaatcatggataactatgcaccaccatgtgggttctgaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 107 ttgttcacatggaactagaatcatggataactatgcaccaccacgtgggttctgaaaact 48

                                                          
Query: 301 gaatccaagtcctctgcagagtaagtgctcttaatcactgagttgga 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gaatccaagtcctctgcagagtaagtgctcttaatcactgagttgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_i23.g1 MSMg01no431_i23.g1 CHROMAT_FILE:
MSMg01no431_i23.g1 PHD_FILE: MSMg01no431_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:55 2005
         (344 letters)



>mm_chr10_101617611_101618354
          Length = 744

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagttctgtctgtaaattatcacctgaaggatatgctcatctcttgcaaagttagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagttctgtctgtaaattatcacctgaaggatatgctcatctcttgcaaagttagtat 260

                                                                       
Query: 61  taacccaaaccttattaatatgtaagatgagaaacagtgtaggatggtttctctagtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacccaaaccttattaatatgtaagatgagaaacagtgtaggatggtttctctagtcta 320

                                                                       
Query: 121 attagcctctagtgctgatttgttttgataatataaataattagtttaaccacaaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagcctctagtgctgatttgttttgataatataaataattagtttaaccacaaaattg 380

                                                                       
Query: 181 atgtaactgaaataattgtcaggcaattaaatactgcagtgatttcagctcttgggaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtaactgaaataattgtcaggcaattaaatactgcagtgatttcagctcttgggaaat 440

                                                                       
Query: 241 atatagcaggaatgtatggtaataaaactgagggaaatgtacttgcttgaaatgcaaaat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atatagcaggaaggtatggtaataaaactgagggaaatgtacttgcttgaaatacaaaat 500

                                                       
Query: 301 tatatcagttttctaagaaataatttagcctccgtattctttat 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatcagttttctaagaaataatttagcctccgtattctttat 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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