Query= MSMg01no431_k10.b1 MSMg01no431_k10.b1 CHROMAT_FILE:
MSMg01no431_k10.b1 PHD_FILE: MSMg01no431_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:03 2005
(499 letters)
>mm_chr10_90951600_90952498
Length = 899
Score = 878 bits (454), Expect = 0.0
Identities = 486/504 (96%), Gaps = 14/504 (2%)
Strand = Plus / Plus
Query: 3 ggaattcctttgggttctccaatccttccttctattcttccataagagtctccaagctcc 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctttgggacctgcaatccttccttctattcttccataagagtctccaagctcc 262
Query: 63 atccactgtttggctgaaagacttgcatttttattaggctatgggtgttaaagagatcta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atccactgtttggctgaaagacttgcatttttattaggctatgggtgttaaagagatcta 322
Query: 123 atgcacctatcatatcagtttaaaataaaaacaagagaactatttttaagtgtaaagaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcacctatcatatcagtttaaaataaaaacaagagaactatttttaagtgtaaagaag 382
Query: 183 ttgaatggagttctctttatctcatgcctaaaaatccaggaaaaaaccccacacctaata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgaatggagttctctttatctcatgcctaaaaatccaggaaaaaaccccacacctaata 442
Query: 243 atcagttacaatggggtacaattcctgactaacttttttta-----ca--cataagcagg 295
||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 443 atcagttacaatggggtacaattcctgactaac-------aagaaccatacataagcagg 495
Query: 296 tggtgataggaagatacttttgggaaccacgattttaaatgtacaaactgatgggggcct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggtgataggaagatacttttgggaaccacgattttaaatgtacaaactgatgggggcct 555
Query: 356 ttttcattgaaaccagcacatgctactacctgcttccattaggcttgtgactacatcatt 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 ttttcattgaaaccagcacatgctactacctgcttcccttaggcttgtgactacatcatt 615
Query: 416 catagtgcatttaatctaacatcagaagtcccatagtcttttagtctcaatactttataa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catagtgcatttaatctaacatcagaagtcccatagtcttttagtctcaatactttataa 675
Query: 476 atgtccaatattaataatttcttc 499
||||||||||||||||||||||||
Sbjct: 676 atgtccaatattaataatttcttc 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_k10.g1 MSMg01no431_k10.g1 CHROMAT_FILE:
MSMg01no431_k10.g1 PHD_FILE: MSMg01no431_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:03 2005
(380 letters)
>mm_chr10_91086921_91087699
Length = 779
Score = 667 bits (345), Expect = 0.0
Identities = 371/385 (96%), Gaps = 11/385 (2%)
Strand = Plus / Minus
Query: 1 aggaatttggaatttttttttcatgttagttattcattgtgctctcagtaattttgagtg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 579 aggaatttggaatttttttttcatgttagttattcattg-gctctcagtaattttgagtg 521
Query: 61 acatctggcatgtagtagctactgaataattacttcctgggtatatgggagaacagtaaa 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acatctggcatctagtagctactgaataattacttcctgggtatatgggagaacagtaaa 461
Query: 121 gatgcatgttgaggaatacatatctgtaatatgatacatttatttgtgaacatttcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatgcatgttgaggaatacatatctgtaatatgatacatttatttgtgaacatttcagtc 401
Query: 181 taaaagaaaaaagggaagcaatagattgcatttttcataaatgtctgctttgtgtgctaa 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taaaagaaaaaagggaatcaatagattgcatttttcataaatgtctgctttgtgtgctaa 341
Query: 241 aactc-----atgtttttattcataaggctacaaagtgagaacgggctgtgtgcaggtag 295
||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aactcaggcaaag-----attcataaggctacaaagtgagaacgggctgtgtgcaggtag 286
Query: 296 agtgcaaatgaggattttatcctaaacagtaatgcattaattcttctaaggagaccattc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agtgcaaatgaggattttatcctaaacagtaatgcattaattcttctaaggagaccattc 226
Query: 356 acatatgacttagctaatgaaaata 380
|||||||||||||||||||||||||
Sbjct: 225 acatatgacttagctaatgaaaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 779
Length adjustment: 9
Effective length of query: 371
Effective length of database: 770
Effective search space: 285670
Effective search space used: 285670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
