BAC Information

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BAC

Clone NameMSMg01-431N01
Chromosome10 (Build37)
Map Location 28,155,542 - 28,155,814
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N01.T7 (MSMg01no431_n01.b1)MSMg01-431N01.TJ (MSMg01no431_n01.g1)
ACCAG523986AG523987
length731732
length of high quality
(start - end)
275 (44 - 318)492 (74 - 565)
definitionCHROMAT_FILE: MSMg01no431_n01.b1 PHD_FILE: MSMg01no431_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:17 2005CHROMAT_FILE: MSMg01no431_n01.g1 PHD_FILE: MSMg01no431_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAATCTATCCTAATTAATAATGTTTACAGAAAATCTCTTTTCAGAC
ATTCACAATCTATAGACATGGGGGGGGTGTTTGCATGAAGTGTTTTGTCA
GCTTCTTGGTGTGAAGATCTGTCAGTCTTATCTCGTAGGATGTCCTGACA
CTGATCACTACAGCTTCTTTAGTTTTAGGATGCTGGGTAAAATCTCCACT
ATCTAACCATCTTCCCTTTTTTTCTTTCTTTGTTGATTTCCAATCCCTCT
ATACTTTCTTATCCAGGTTTCTCTCCCATAGGTATAACCCTCCAGCTACT
CTACCCTACAGGCACACACATGCATTTATATCCAGTTGATTTTTGTCTTT
CCCAACGTCTTCCAAATTGATCCTTATTAATGCAAAGATTCGTTAATCCT
CTCTGTGAAGAAGCGAATCATTTTCCAGCAGCCCTTACTTATGTTTTAAT
GCCCCCTATATGTGTTTGACTCAACCCTTGTTTTTCTCTTTTCTTCCCCC
CCTTTTCTCATTTTCTCTCCCCCTCCCCCCCCTTTCTTTTTCACCCTGTT
CGACTTTATTTCCTCCCCCCAACTAATCCTCTTCCCTCCCTATTTTTTTT
TTTCTCTCTATTTTCCCTCTTTTCCTCTCTTTCTCACTCTTTCTTCCTTC
CTCTCCTCTCATTCTTCTTCTTCCTCCCCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAAAAATGAAGACATATCATATCCA
AACCTAAGGGACTCAATGAAAGTGTTGTTAAGAGGAAAATTCATAGCACT
AGTTGCCTTCATAAAGAAATTGGAGAGATCCCATTAAAGCAACTTAACAG
CATACCTTAAAGCTCTAGAACAGAAAGAAGCAAAGACAATCAAGAGTAGA
AGGCAGGAAACAGTCAAACTCAGAGCTGAAATTAACCAGGTACAAACAAA
GAGAACAATACAAGGAGTCAGCAAAACTAAGAGCTGGTTCTTTGAGAATC
AACAAGATAGACAAACCTTTAGCCAAACTAACTAAAGGGCACAGAGATTG
TATCCAAATTAACAAAATCAGAAATGAGAAGGGAGAGATAGCAACAGAAA
CTGAGGAAATTCAAAAAATCAGAATCTACTACAAAAGCCTATATTCTACA
AAACTGAAAAATCTAGATGAAATGGATGATTTTCTAGACAGATATCATGT
ACCAAAATTAAATCAAGGTCAGGTAAACTGTCCAAACAGTCTCATAATGC
GTAATGAAATAAAAATAGTCATCAAATATGGGACCATGAAAGGGACCCTG
CTTTCTGGTTGAGTCTGGTTTTAAACTCCAGAGACCCCCCCAGGTGTTCC
TTTCTAGGTACGGAAGGGCTTTTTGCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n01.b1 MSMg01no431_n01.b1 CHROMAT_FILE:
MSMg01no431_n01.b1 PHD_FILE: MSMg01no431_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:17 2005
         (275 letters)



>mm_chr10_28155338_28156014
          Length = 677

 Score =  493 bits (255), Expect = e-144
 Identities = 268/273 (98%), Gaps = 2/273 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatctatcctaattaataatgtttacagaaaatctcttttcagacattcaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatctatgctaattaataatgtttacagaaaatctcttttcagacattcaca 264

                                                                       
Query: 65  atctatagacatgggggggg--tgtttgcatgaagtgttttgtcagcttcttggtgtgaa 122
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctatagacatggggggggggtgtttgcatgaagtgttttgtcagcttcttggtgtgaa 324

                                                                       
Query: 123 gatctgtcagtcttatctcgtaggatgtcctgacactgatcactacagcttctttagttt 182
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatctgtcagtcttatcttggaggatgtcctgacactgatcactacagcttctttagttt 384

                                                                       
Query: 183 taggatgctgggtaaaatctccactatctaaccatcttccctttttttctttctttgttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggatgctgggtaaaatctccactatctaaccatcttccctttttttctttctttgttg 444

                                            
Query: 243 atttccaatccctctatactttcttatccaggt 275
           |||||||||||||||||||||||||||||||||
Sbjct: 445 atttccaatccctctatactttcttatccaggt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space:   177688
Effective search space used:   177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)