BAC Information

Click to search

BAC

Clone NameMSMg01-431N19
Chromosome10 (Build37)
Map Location 97,811,838 - 97,812,320
singlet/doubletsinglet
Overlap geneEG667438
Upstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N19.T7 (MSMg01no431_n19.b1)MSMg01-431N19.TJ (MSMg01no431_n19.g1)
ACCAG524022AG524023
length786753
length of high quality
(start - end)
524 (33 - 556)501 (61 - 561)
definitionCHROMAT_FILE: MSMg01no431_n19.b1 PHD_FILE: MSMg01no431_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:22 2005CHROMAT_FILE: MSMg01no431_n19.g1 PHD_FILE: MSMg01no431_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAATAT
CTCTACTGGGGAGGATAGTTTGAAAACCTATACTTCAAAGATCTAGCAAA
CGTAGAAAATTAGACAAAATCTTATATATATATATGTATGTATGTATAAC
CAAAATTAAATCGAAAGAATATAAACAAGTTTAAAAGATCATACTGAGTA
ATGAGAATAAAGCAATATATCAGTAATAGTCTCATATAAAAACTCTAAGT
AGGGCTAGAAACATTTACTACAAAAATCTTTCAGAAAATGATTAGAGAAA
TAATACAGTTGTTCCTTAAACCATTCTACGAAGAATAAAAGACGGATCAC
TACCACACAATTCTATGAACCCAGTATTCTCCTGTTACCAAAACCAGACA
AGACCCAACAATTCAGGAGACTACTTATGGTCCAATTTCCATGATGAACT
TGATGCAAATTTTCTCAATAAAATATTCATTAACTAAATATAAAAACACA
GGAAAAGTTCATATATCATCTGAATAGTTTCATTACAAAAATTTGCAACA
TGTACAAATTAAGAGTTTGTTCTGTATCCATTCCTTTGNTGAGGGACATC
TGGGNTCTTTTCAGCCTCTGGCTATTATAAATAANGCTGCTATGAACATA
GTGGAAGAAGTGTCCCTATTAACCGGCTGGGAAATCCTTCTGGAAATTTT
CCCCCCAAAAGAATTGCGGAATCCCCCAAGCCCCTCCCCAAAAGAATGGG
TCCCGAAAAGTTGGTAACTTTTACCCCAGGGGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTTCTGAAACAGAACGGGTGGAAAAGATTCTGTTTGCTC
GCCACAGTTCAGTAAGCAGTCCAATAGGCCGAGACTTAGATACAAACAGG
CATGCCTGGAGTACTGTCCAAAGCCACCATGTCCCCATAATCAAGGCCAG
TGTACTTGCTGGCAGAGGCCCAGGAACTGGGAATGGCAGGGTGTTCTGCA
AAGCATAAAATGGTTTTCCAGATTACTAGTTTTTAGCCTAATGGTAATAG
TTCTCAGCAGTGAGTTGAAAAGAAATCCTCAGTTGGAAAACTGTAATTGC
TTCCTCCTCCCCTTCTTCCTCTTCCTCCTTTTCCTTCTCTTCCTCCCCCT
TGCGATTTCTTTTCTTCTCTTTTTCCTCCTTTTCTTCTTTCTCTTCTTGT
TCCTCTGCATAGTTCTCCTTCATCTTCTGTCCTTGAAATAAACCAGATTG
TTTTCTTTCGTTGCTTCTCTAGGGGTTTCATGTATTCCCATATTGTTGCA
TTCACTGTATGCAAATAGGAAAAGGAAAAGAGTTGTGTAAAAAAATAACT
CTCCTCAGAAACAGACTAAGAATTATATACTCCAAATTAATTCCTAAAAT
TTAAGTACCGAAGTAAGGCAGGAGTGTATATAACACAAGGGTCCCTTTAC
TGTACCCGGCTGACCGATAGGTCAACCAACCATGACTTATTTCTAAATAA
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n19.g1 MSMg01no431_n19.g1 CHROMAT_FILE:
MSMg01no431_n19.g1 PHD_FILE: MSMg01no431_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:22 2005
         (501 letters)



>mm_chr10_97811829_97812730
          Length = 902

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctg-aaacagaacgggtggaaaagattctgtttgctcgccacagttcagtaagcag 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcttctgaaaacagaacgggtggaaaagattctgtttgctcgccacagttcagtaagcag 433

                                                                       
Query: 60  tccaataggccgagacttagatacaaacaggcatgcctggagtactgtccaaagccacca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tccaataggccgagacttagatacaaacaggcatgcctggagtactgtccaaagccacca 373

                                                                       
Query: 120 tgtccccataatcaaggccagtgtacttgctggcagaggcccaggaactgggaatggcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgtccccataatcaaggccagtgtacttgctggcagaggcccaggaactgggaatggcag 313

                                                                       
Query: 180 ggtgttctgcaaagcataaaatggttttccagattactagtttttagcctaatggtaata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggtgttctgcaaagcataaaatggttttccagattactagtttttagcctaatggtaata 253

                                                                       
Query: 240 gttctcagcagtgagttgaaaagaaatcctcagttggaaaactgtaattgcttcctcctc 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 gttctcagcagtgagttgaaaagaaatcatcagttggaaaactgtaattgcttcctcctc 193

                                                                       
Query: 300 cccttcttcctcttcctccttttccttctcttcctcccccttgcgatttcttttcttctc 359
           | |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 192 ctcttcttcctcttcctccttttccttctcttcctccccctcacgatttcttttcttctc 133

                                                                       
Query: 360 tttttcctccttttcttctttctcttcttgttcctctgcatagttctccttcatcttctg 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tttt-cctccttttcttctttctcttcttgttcctctgcatagttctccttcatcttctg 74

                                                                       
Query: 420 tccttgaaataaaccagattgttttctttcgttgcttctctaggggtttcatgtattccc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 73  tccttgaaataaaccagattgttttctttcgttgcttctctaggggtttcgtgtattccc 14

               
Query: 480 atat 483
           ||||
Sbjct: 13  atat 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space:   437972
Effective search space used:   437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)