BAC Information

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BAC

Clone NameMSMg01-432D08
Chromosome10 (Build37)
Map Location 17,056,903 - 17,057,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432D08.T7 (MSMg01no432_d08.b1)MSMg01-432D08.TJ (MSMg01no432_d08.g1)
ACCAG524283AG524284
length785803
length of high quality
(start - end)
455 (36 - 490)436 (70 - 505)
definitionCHROMAT_FILE: MSMg01no432_d08.b1 PHD_FILE: MSMg01no432_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:50 2005CHROMAT_FILE: MSMg01no432_d08.g1 PHD_FILE: MSMg01no432_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACGAGGATCCGCGGAATTCAC
AAGGGAATTCCTTTGGACTTAAAGTTTTCTTTCTAGGAAGTTTTTAGTTA
GAAAATATTTCAAATATATTTTAGTCAAGCTTGGTTTTTTTCTTTTGTCT
TATGTAGTCTTTAGTAATTTGTGTTAGGGTCTGCTTGCTTTGGTTCTTCT
CTGTCTCTCTGATAGTTTAATGTATTTGAATAAATGCGTTCACAGTAGGT
GAGACTTAGAGTCTTTCATCCCCTCTTCCAGATCCAACCTGCCAGTCTCA
TCCCAGCTCTGCAGCAAACTGCCTGCTATGATATCCTCTTCCTGTCTGCA
CCTTTCTCCAGTGGATTCGGCAGATCTCTTTCTCCAAACTTCCTTCAAAC
CACTTATTGCTTTATCCCAGACCACAACTCCAATAGGCATTAACTTGGAA
GTCACAAGCCACTTCTGCCAGCATAGCAGCAGGTAGGCTAACTGAAGATC
TTCACTTTGTCCTCCATCCCTCCAAATCTAATCCCCTGCATCTCATCCCT
CTCTCTGANTCAGACCTTTTTCTGTGGGCTCCTCATTCTCTGGTCCCATT
CCCGGAAAATGAGTATAACCTTGGGAGGAAAACCTTGGTGAATTTTTTTC
CATGTGAACCCCCTCTCAGAATTCTCTTAATTTTATCCCCTTTTTCTTAT
TATTTTCTCCATCAAAAACACATTTATTTGGAATATAATTCCCCTTTGTT
TACAACCGCTCTAATACAAAATAATTGTCTTTATN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTCAATGCCTGATGCATCAATTAACTATT
ACTGCTATTAACACATATCAGACACTGTTAGCATTTTCTACTTCAGAAAG
GATTAAATATCCCAGCTCTCAGAGGAGGAGGCGTATATGTAAATGAGAAA
TTCAGGAGAGGGAGATCTGTATAGAAGGAAGCTACAGTTAGAGGCTTTGT
GCTGGAGGAAGGAGTAATTCTGCAAGCTCAACAGAGGCTATAGATGATAG
GTCACAGGTGTGACATTTCAGTGGCCCAGTGCATCCTCTGTGGTTACCTC
TCCCTTGTCTTCTAGGGAACATCACCAATATTTTGGCTGTAGGAGAGGTT
ACAATGGTTGGCTTTTCTGAGAGCCTGTGTATTACTAATACCTGTCTTGC
AGACAATTGTAATCCATTAAGCCTTAAGTAGGTGAATATTTATGCATATC
TGGGGTGCTGACATAGCCTATTGAGACATCTTTAAAGCACACCTGCACAG
AATGGATATGTTTTGTTTGCTCCCTGGACATCTTCAGGGTAGTTTTCTCC
CGGTCGCTTGGTTTCACGGTCCCCATTTTTTTTTTTTTATACCCGGGGTC
CTCCTAATCCCCTTTTTTCCTCCCTCACTTGTTGTTTTTTCTGTTACCGT
CGATCATCCTGCATTAGTTTTGTACTCCCTTTACTGTTGACACCTTATGA
CGCTTTTCGTTATTGATCGCGTCTCTTCATCACCTTCTCGCCTGTTCGCT
ACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_d08.g1 MSMg01no432_d08.g1 CHROMAT_FILE:
MSMg01no432_d08.g1 PHD_FILE: MSMg01no432_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:51 2005
         (436 letters)



>mm_chr10_17056703_17057540
          Length = 838

 Score =  785 bits (406), Expect = 0.0
 Identities = 428/436 (98%), Gaps = 2/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcaatgcctgatgcatcaattaactattactgctattaacacatatcagacactgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctctcaatgcctgatgcatcaattaactattactgctattaacacatatcagacactgtt 577

                                                                       
Query: 61  agcattttctacttcagaaaggattaaatatcccag--ctctcagaggaggaggcgtata 118
           ||||||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||
Sbjct: 576 agcattttctacttcagaaaggactaaatatcccagctctctcagaagaggaggcgtata 517

                                                                       
Query: 119 tgtaaatgagaaattcaggagagggagatctgtatagaaggaagctacagttagaggctt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgtaaatgagaaattcaggagagggagatctgtatagaaggaagctacagttagaggctt 457

                                                                       
Query: 179 tgtgctggaggaaggagtaattctgcaagctcaacagaggctatagatgataggtcacag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgtgctggaggaaggagtaattctgcaagctcaacagaggctatagatgataggtcacag 397

                                                                       
Query: 239 gtgtgacatttcagtggcccagtgcatcctctgtggttacctctcccttgtcttctaggg 298
           |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 396 gtgtgacatttccgtggcccagtgcatcttctgtggttacctcttccttgtcttctaggg 337

                                                                       
Query: 299 aacatcaccaatattttggctgtaggagaggttacaatggttggcttttctgagagcctg 358
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 336 aacatcaccaatattttggctgtagaagaggttacaatggttggcttttctgagagcctg 277

                                                                       
Query: 359 tgtattactaatacctgtcttgcagacaattgtaatccattaagccttaagtaggtgaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtattactaatacctgtcttgcagacaattgtaatccattaagccttaagtaggtgaat 217

                           
Query: 419 atttatgcatatctgg 434
           ||||||||||||||||
Sbjct: 216 atttatgcatatctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space:   353983
Effective search space used:   353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)