BAC Information

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BAC

Clone NameMSMg01-433D05
Chromosome10 (Build37)
Map Location 105,014,920 - 105,015,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433D05.T7 (MSMg01no433_d05.b1)MSMg01-433D05.TJ (MSMg01no433_d05.g1)
ACCAG525038AG525039
length760758
length of high quality
(start - end)
272 (39 - 310)270 (71 - 340)
definitionCHROMAT_FILE: MSMg01no433_d05.b1 PHD_FILE: MSMg01no433_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:13 2005CHROMAT_FILE: MSMg01no433_d05.g1 PHD_FILE: MSMg01no433_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTTTTTCCCCGACCAGACCTAGCCTACATTTGTTCTGCATTCCCGGGGCC
TTTGTTGTATAATTCATACCTTTGTGGTGCCAGTTCCTCGGGGGTAAAGA
TTTCCTTATTTTCCTAAGACATTTTTAGTTTATTGTGCAATCCCATCTTC
CCTTTGGGTGTTGCATAAATATTAACTAAAAGTCTACATCTGGTGTTCGT
CGTCATTTCTATTTGTCCTAATATATCTTCGCTTTGAACAATTCATTCGG
AAAGTGTGCCTTTGTGTGAAATGTGGCACATTAATTCCCTTTGCACTACA
CAGAGTGCTTTGTAAAATGCCCTCGGATTTGGTTATTTATGACGAGAAGA
TTTGTTCTTCTTCCTTACAGTCTCTATTCCTATTGTTGTAGCAGTGCAAA
GTAACCTCCATTCCTTCATTTGTTTTCTGCCTGGCCTTCCAGGATTCTCT
CGTTCTTTGTTTAACAGATTGTTCCAGTTACTCTTCTCTTTCCTATATTA
CTTTACTTTTTCTTGTTGAATCTTGCCTGTTTCTGGTAGTCCCTAACAGA
TGATCTTTTTGCGTGGGCCCACTGTGTTACCTCTGGGCCCTTTTTTCCCG
TCATTTCTATTTTCCCTTTTTATTCATCTCTTTCTCTCGCCTGTATTTAT
CCGGTCTTTCTTTTTCCTCCCCCTCCCTTTTTTGCTCGCCTTCTCCTCCT
CCTTTTTCCA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGGAAATGCCTCTCAAGTACAAAACTAG
AAATAAGTGGAGAGAGAGTCTGTGTTCATGGGTAGGAAAATTCCCTGTTC
TCAAGTGTCAGTGCGCCCCAACTTGAGACAATGTTTCAGTATATCTCAGT
CAGTATTTCAAAAAGGTTTCCTGTAGACGTAGAAACTGTTTCTAAGTCTT
TTGTAGAAAAGAATCAAAAAGAGCTAACAATACTAACTGAAAAGAAAGCT
TACAAATTGTTACTAGGTAGCTTTAAGATTTAGTGTATAGACTAGTAGAT
ATTTGTAGAGTAATATATAAATGGGTCCAGGAACAGAACTGAGAGCCCAG
AAGTAGACCCACCTAAATGCAGCCAAGTGGACTTTAGCAAGGAGACAAAG
ACTATGGAGTAGAGCGAATAACCTCTTCACCACATGCTGTTCATACAACA
GGTCAGACCCCATTATATACATGACTCTACAAATACACTTTTCATCTTTT
TCAAATCCGTACCGTTTCCTCCTATTGTAACTGCTACTTTCCCGCCCATG
CTTCTTTATCTTTCTAATCCCATTTTTTCTTTCTCCTTTCTTTTTTCCTA
TTTCCCCTCTTTTTCCTTTACTTCTCGCTTCCTCTTTCCCCACTTCTATT
TTTTCCCTCCTTCTCTTTCTGTCCCCCCGTTTCCTCTGTTTCTCTTCTCT
CATTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_d05.b1 MSMg01no433_d05.b1 CHROMAT_FILE:
MSMg01no433_d05.b1 PHD_FILE: MSMg01no433_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:13 2005
         (272 letters)



>mm_chr10_105014716_105015387
          Length = 672

 Score =  482 bits (249), Expect = e-140
 Identities = 264/271 (97%), Gaps = 6/271 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttt-t--tccccgaccagacctagcctacatttgttctgcattcccggggc 61
           |||||||||||| |  ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttatagtc---gaccagacctagcctacatttgttctgcattcccggggc 261

                                                                       
Query: 62  ctttgttgtataattcatacctttgtggtgccagttcctcgggggtaaagatttccttat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctttgttgtataattcatacctttgtggtgccagttcctcgggggtaaagatttccttat 321

                                                                       
Query: 122 tttcctaagacatttttagtttattgtgcaatcccatcttccctttgggtgttgcataaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttcctaagacatttttagtttattgtgcaatcccatcttccctttgggtgttgcataaa 381

                                                                       
Query: 182 tattaactaaaagtctacatctggtgttcgtcgtcatttctatttgtcctaatatatctt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 tattaactaaaagtctacatctggtgttcgtcgtcatttctatttgtcctaatataactt 441

                                          
Query: 242 cgctttgaacaattcattcggaaagtgtgcc 272
           |||||||||||||||||||||||||||||||
Sbjct: 442 cgctttgaacaattcattcggaaagtgtgcc 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)