BAC Information

Click to search

BAC

Clone NameMSMg01-433G14
Chromosome10 (Build37)
Map Location 7,808,472 - 7,949,013
singlet/doubletdoublet
Overlap geneUst
Upstream genePpp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046
Downstream geneSash1, LOC100039173, EG666625
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G14.T7 (MSMg01no433_g14.b1)MSMg01-433G14.TJ (MSMg01no433_g14.g1)
ACCAG525200AG525201
length844761
length of high quality
(start - end)
141 (72 - 212)417 (67 - 483)
definitionCHROMAT_FILE: MSMg01no433_g14.b1 PHD_FILE: MSMg01no433_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005CHROMAT_FILE: MSMg01no433_g14.g1 PHD_FILE: MSMg01no433_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,808,472 - 7,808,606)(7,948,593 - 7,949,013)
sequence
CCCTATAATTGCGGCCGCTATACGACTACTATTTTCAGACATCCGCGGAA
TTCTCTAAGTTTCGAGAATAGAGTAGATTCTAGTAGGAACAAAATTTATT
TTAGTGCTAAATAACATCAAAAAGACAAAAAGCCCTAAGCCTTTTCAATT
ATAATCCTCCCAGGGGTAAAAAAGATGATATTGTGTGTGTGTGTGTGTGT
GTGTGTGTCTCTTTTCTTTTCCCCCCTTTTTTTTCCTCCTCACCCTTTTT
TTTTTTCCNCTTTCCCTCCTCCCCTTCTTTCTTTCCTCCTTTTTTCCCCC
CCACTCCTCCCGACACCTTTACCTCGCTTTTCCACAACCCCCCTCCCACC
CCGCGTCCCTTTTTTTTTTTTTTCCCTCTTCTGCTCTCCCTCTTTTTTTT
CCCCCTCTTTTTTTTCCTCCTTCTTCCTTTTTCTTCCTTTTTTTTTTTTT
TTCCCCCCCCCTCCCCTCTTTTTTTCTTCCCCCTCCCCCCCCTTTCTTTT
TCTTTTTCCCCTCTTTTTTTCCCCCCCCACCTNCTCCCTTTTTTTTTATT
TATCCTCTATCTTATTTTCATTTTTCTCCCCGCTCTCTTTTTTTCTCCCC
TTCCCTCCTCCTTTTTTTTCTGCCACCCCCTTTGTTTTTTCCCCCCTTTC
TCTTTTCTCACTTCCCCTCTTTTTTATTTTATTTCCCTCCCTTTACTTAT
TATTTTTTCCCACACCTTTTTGTTTTCCCCCGCTCTTCTTTTATCTCTAT
CCTATACCTTCTTCCCATTCCCCACTCCCTTCTTTTCTTCTTCCTCCCCT
CTTTATCACTTTCTCTTTTTTTTTCTTCCCCTCTTTTTTCCTTN
GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCCTCCTGTGTTATTTTGAAACTCACCTTTG
AAAGTAGTAACTGGAGTTATTTTCTAATACAAATTCTGAGGTCACATGAA
GTTGACTGACCACATCCCATGGCAGATCCCCATTTGCTCTTGTTTATTTT
AAAAATAAACCTAGAGTAAAAAATACATGTACCCCCGATCTCAGATACAA
ATTGAAGCCAGACATTATTTCCACACATCTGTGAAATGGAGCAAGCAAGC
CAGTGGTATGACATGGTGCCTAATGCTTAACCATGTTTTACTAGTCATTG
CTAAGGCTGAATTAACGGTGACTTGGAGAATATGTGACAAATGACGCTGT
CATGGTAGCCTCTGCCTCTTTAATGTTCTCCATCAAGGATTCTTCATGCT
CATGTGAGGTAGTCAGAGAACACATCTTCAGAAGGATTTATGGGGCATTT
TANACACTCACAGTCCTGGTTTTCTGAAATCTAATCTTTTGTGCTCTCTC
ACCCCCTTTTCGGGTTGCATGCTTCAAAACTGGCTAACAAATTTCTCCTT
AATAATTTTCAGCCCTTGGGAAAAATTCCAGCCCCCCTTTTTCCCCCTTT
GCCGTTTTGTTCCCCCCCACCTTCTCTTCTTATTACCTTCTCCTTTTCCC
TCCTTAATTGCTTTTCCCCTTTCCTTATCCCTTCCTCCCTTTTCCCCTTT
TCGTTTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g14.b1 MSMg01no433_g14.b1 CHROMAT_FILE:
MSMg01no433_g14.b1 PHD_FILE: MSMg01no433_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:29 2005
         (141 letters)



>mm_chr10_7808272_7808812
          Length = 541

 Score =  253 bits (131), Expect = 2e-72
 Identities = 135/137 (98%), Gaps = 2/137 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagattctagtaggaacaaaatttattttagtgctaaataacatcaaaaagacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagattctagtaggaacaaaatttattttagtgctaaataacatcaaaaagacaaaaa 260

                                                                       
Query: 61  gccctaagccttttcaattataatcctcccaggggtaaaaaagatgatattgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 261 gccctaagccttttcaattataatcctcccaggggtaaaaaagatgat--tgtgtgtgtg 318

                            
Query: 121 tgtgtgtgtgtgtgtgt 137
           |||||||||||||||||
Sbjct: 319 tgtgtgtgtgtgtgtgt 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no433_g14.g1 MSMg01no433_g14.g1 CHROMAT_FILE:
MSMg01no433_g14.g1 PHD_FILE: MSMg01no433_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:30 2005
         (417 letters)



>mm_chr10_7948393_7949213
          Length = 821

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/421 (98%), Gaps = 4/421 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcctcctgtgttattttgaaactcacctttgaaagtagtaactggagttattttcta 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcctcttgtgttattttgaaactcacctttgaaagtagtaactggagttattttcta 562

                                                                       
Query: 61  atacaaattctgaggtcacatgaagttgactgaccacatcccatggcagatccccatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacaaattctgaggtcacatgaagttgactgaccacatcccatggcagatccccatttg 502

                                                                       
Query: 121 ctcttgtttattttaaaaataaacctagagtaaaaaatacatgtacccccgatctcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttgtttattttaaaaataaacctagagtaaaaaatacatgtacccccgatctcagat 442

                                                                       
Query: 181 acaaattgaagccagacattatttccacacatctgtgaaatggagcaagcaagccagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaattgaagccagacattatttccacacatctgtgaaatggagcaagcaagccagtgg 382

                                                                       
Query: 241 tatgacatggtgcctaatgcttaaccatgttttactagtcattgctaaggctgaattaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgacatggtgcctaatgcttaaccatgttttactagtcattgctaaggctgaattaac 322

                                                                       
Query: 301 ggtgacttggagaatatgtgacaaatgacgctgtcatggtagcctctgcctctttaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgacttggagaatatgtgacaaatgacgctgtcatggtagcctctgcctctttaatgt 262

                                                                       
Query: 361 tctccatcaaggattcttcatgctcatgtgaggtagtc----agagaacacatcttcaga 416
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 261 tctccatcaaggattcttcatgctcatgtgaggtagtcagttagagaacacatcttcaga 202

            
Query: 417 a 417
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 821
Length adjustment: 9
Effective length of query: 408
Effective length of database: 812
Effective search space:   331296
Effective search space used:   331296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)