BAC Information

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BAC

Clone NameMSMg01-433K10
Chromosome10 (Build37)
Map Location 78,532,058 - 78,532,444
singlet/doubletsinglet
Overlap gene2610008E11Rik
Upstream geneIcosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
Downstream geneEG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K10.T7 (MSMg01no433_k10.b1)MSMg01-433K10.TJ (MSMg01no433_k10.g1)
ACCAG525384AG525385
length774754
length of high quality
(start - end)
247 (75 - 321)390 (70 - 459)
definitionCHROMAT_FILE: MSMg01no433_k10.b1 PHD_FILE: MSMg01no433_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005CHROMAT_FILE: MSMg01no433_k10.g1 PHD_FILE: MSMg01no433_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACATCCGCGG
AATTCAGAAGGAATTTCGAGACAATTTTACCTATTCAGTAACATTCAAAT
TTACTTCTAGTAGAGTCAGTGAAACTAATTAGGCATTACAAAGAACCTAG
CCTGATTAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGAGGCAGTAGCC
AGTCTCACCCATACACAATGGCCTAGCTAATAGGTGGGTTTACCATGTAA
AAGTTATGGAATCCCACTGAGACAGGGATCTTCACTACAGCCAGATATAG
CAGGCTACATTGCATATTATATTTCTGCTGGTGAATTCTTCTGACAAATG
GAGATTCTCAACTGATACTTACAAGTTATACAAGAATTTATCAGGGCCTA
GGAAATCCGGGGTTGTGGTATTTTATTATTCATAAAAAGGTCCGCTACAG
CAGAATTTCTGGCGCTAGCTTTCCCTAGTTTCCTATGACTATTACTACCC
GCGACTAGGTTGTGAAATCCCTACCTATCATTTAATCTGCACCCCAGGCA
GTATCGCCCTTCACCCCCACTGTTACATCCCCCCCTTGTTTCCCGCCATT
TCCTTTTTTAATCCCCTCTTTTTTTTTTTATCCGCCCTTCTTTTTTTTTT
GCCCCTCCTTCTTTTCCCCCCACCTTCTTTTCTCCTCTCCTTCGTTATCC
GACTCCCCCCCAATCCCTTTCTCTTCTCCCCCCCTTTCCCCTTCCCTTTT
TTTTTCTCCCTCCTTTTTTCCTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTTATAAGTAAAAATAAAGATTAGGGAA
GGAATTGCTATGCATGTATAATTCAATTTATTTACTTTGTTCTGAGTCAC
AGCTAAATATTTACTTACGAAAATTTCTGCCTGAAAAAAAAATAAATCCG
TTTTCTTCAAATTCTTCATTAGGTCTATCTTATGTTTTGTGCATAGCTTT
CATTTTCTGGATTTACATGGGCTTCCTAAAACTGAAATTTTTTTCACTTG
AATCAACTTCTTTATGACTATTTTAAAATAGCTATATTTATTTCTAGAGT
AACAACACTAACAATATAGTAAAAATATGTTAGCCGGGCAATGGTGGCAC
ACACCTTTCATCCCAGCTCTTGGAAAGCAGAGGCAGGTGGATTTCTGAGT
TCGAGGTCAGTCTGGTCTACAGAGTGAGTTCCATAACAAGCAGGGCTATA
CTGAGAAACCCTGTCTTTGTTAAGAGAAGGATAGTAACCTATACTCCGAG
AAGCCTCTGTGTTCTCCACCACTGGTTTTATTTCGACGCAAACTTACCTT
TTTCCTCTTTCTTTTCCTCTTTCTCTCTTCTTTTTTTCTTCCCCTCCTTT
CCCATCCTCTCTCCCCCCCCACTTTTTCACATCCGCTTTCCCGTCCTTTC
CCCCTTTTCCACTTTCCTTTCCATTTTCCCCTTTTTCCCTATTTCTTCTC
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k10.g1 MSMg01no433_k10.g1 CHROMAT_FILE:
MSMg01no433_k10.g1 PHD_FILE: MSMg01no433_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:48 2005
         (390 letters)



>mm_chr10_78531858_78532647
          Length = 790

 Score =  681 bits (352), Expect = 0.0
 Identities = 379/388 (97%), Gaps = 2/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttataagtaaaaataaagattagggaaggaattgctatgcatgtataattcaattt 60
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tctcttataagtaagaataaagattagggaagggattgctatgcatgtataattcaattt 260

                                                                       
Query: 61  atttactttgttctgagtcacagctaaatatttacttacgaaaatttctgcctgaaaaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 atttactttgttctgagtcacagctaaatatttacttacgaaaatttctgcctg-aaaaa 319

                                                                       
Query: 121 aaataaatccgttttcttcaaattcttcattaggtctatcttatgttttgtgcatagctt 180
           ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 320 aaataaagccgttttcttcaaaatcttcattaggtctatcttatgttttgtgcatagcct 379

                                                                       
Query: 181 tcattttctggatttacatgggcttcctaaaactg-aaatttttttcacttgaatcaact 239
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 380 tcattttctggatttacatgggcttcctaaaactgtaattttttttcacttgaatcaact 439

                                                                       
Query: 240 tctttatgactattttaaaatagctatatttatttctagagtaacaacactaacaatata 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttaggactattttaaaatagctatatttatttctagagtaacaacactaacaatata 499

                                                                       
Query: 300 gtaaaaatatgttagccgggcaatggtggcacacacctttcatcccagctcttggaaagc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaaaaatatgttagccgggcaatggtggcacacacctttcatcccagctcttggaaagc 559

                                       
Query: 360 agaggcaggtggatttctgagttcgagg 387
           ||||||||||||||||||||||||||||
Sbjct: 560 agaggcaggtggatttctgagttcgagg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)