BAC Information

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BAC

Clone NameMSMg01-433M02
Chromosome10 (Build37)
Map Location 44,069,972 - 44,070,265
singlet/doubletsinglet
Overlap geneAtg5
Upstream genePdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
Downstream geneLOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M02.T7 (MSMg01no433_m02.b1)MSMg01-433M02.TJ (MSMg01no433_m02.g1)
ACCAG525464AG525465
length741735
length of high quality
(start - end)
280 (73 - 352)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no433_m02.b1 PHD_FILE: MSMg01no433_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:56 2005CHROMAT_FILE: MSMg01no433_m02.g1 PHD_FILE: MSMg01no433_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACGGTATCCATCAGTCTTTGGGCATTTTCTGGTTGGGAAAGT
TTTAATTACCATTTCTATTCCACTGAGGGTTATGGGTCTGTATAAATTGC
TTATTTCATCTTGGTTTTGGTAGACCATGGTATACCAAGAAATTTATCCA
TTTCTTTTGGATTTTCTAGTTTAGTGGAATAGAGACTTGCAGTATGTCCT
TGTGATTCTCTGAATTTTCTTGGTGTCCATTGTAATTTCCTCTCCTTCAA
GTCAAATATTTTAATTTGGATCTTATTTTGTTTTTGTTGTTGTTGTTTTG
CTTGTTCCTTTGCTGTCCTCTTCTCCGCGCCCCCCGTCCCCCCCCCCGTT
TTCTCCTCCCCTTCTCTTTTCCCCTTTTTTTTTTTTCCCCCCCCTCTCTC
TTTTTTTTCCCCCCCCCCGCCTTTTTCTCTTCCCCTTTTTCCCCCCCCNG
TCCTTTTTGCTCTTCCTCTTCTTTTTCTTTTTCTCCCTCCTTTTTTCTCC
CTCCCCCCTTTTTTTTCTCCCCCTTTTTTTTTCCCCCTCTTTTTTCTTTC
CCTCTTTTTTTTTTTCCCCCCTTTTTTTATCTTTCCACTTTTTTTATCCC
CCCCTCTTTTCTTTTCCCTCCTTGCCTCTTCCCACCCTCCTTTTCCTTCC
CCCCCCTTTCCTTTCTTTTTTTTTCTCCACTTTTTTTCCTN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACGGCTAAATAGTTTTAATTCTGATAG
AATTGTATTCAGTTTTTAGTGGGTTGTGTTTAGGGCTTTTTTTATAATGT
CTTCTAGTCAGTAGATAATATATTTGTGTGCTTATAAAATAAAAGTTGGT
GTGAAGGAGCTCAGAGCAGTTGCTCTGCCTTGGGTCCCGTTTGGAGGCAC
AGTGGCATTTCCCCATGCATCTAATTCCTGTCGCCTCAGGTTTTGGAAAT
TGGGAACCTTCGTTGGTTTATGAATACTGCTCCCGCACTAGTTAGAGGAT
GACAGGCCTGCGAGTGTCCTCACTGTATCCCACTCTGTGGAACAGAAACT
GATTTCCTACTTTGAACTGTGCTAAGGCCTTGCCCATGTTCTCTGCAACA
CTTCTCTTTCCCTGACTAGCTCGCAGGCGCCTTACCACTCCCTGCACAGA
TCCCCGTCATTCTCCTGTCGTTTGTTTCTCAGGCCCCGCCCCCTACACAC
TTGCGTTACCTCGTTCACCCTTACCCCGTTCCTCGCTATCTTCCTGTTCT
TTTCCGTCTTGCTCTCTTTCGGTTTCCCGCCCCGCCTTTGCTTCCGTGTG
GGTCCCCAGGTTTCCCTTTCGCTTTCCATCCGTACTCCGTTTTCGCTTAG
CTTTCCCTTACCCCCTTTTCCTTTATCTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m02.g1 MSMg01no433_m02.g1 CHROMAT_FILE:
MSMg01no433_m02.g1 PHD_FILE: MSMg01no433_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:56 2005
         (294 letters)



>mm_chr10_44069772_44070465
          Length = 694

 Score =  522 bits (270), Expect = e-153
 Identities = 288/294 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacggctaaatagttttaattctgatagaattgtattcagtttttagtgggttgtgttt 60
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 201 tgacggctaaatagttttaattctgatggaattgtattcagtttttagtgggttgtgtct 260

                                                                       
Query: 61  agggctttttttataatgtcttctagtcagtagataatatatttgtgtgcttataaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctttttttataatgtcttctagtcagtagataatatatttgtgtgcttataaaata 320

                                                                       
Query: 121 aaagttggtgtgaaggagctcagagcagttgctctgccttgggtcccgtttggaggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagttggtgtgaaggagctcagagcagttgctctgccttgggtcccgtttggaggcaca 380

                                                                       
Query: 181 gtggcatttccccatgcatctaattcctgtcgcctcaggttttggaaattgggaaccttc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gtggcatttccccatgcatctaattcctgtcgcttcaggttttggaaattgggaaccttc 440

                                                                 
Query: 241 gttggtttatgaatactgctcccgcactagttagaggatgacaggcctgcgagt 294
           | |||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 441 gctggtttatgaatactgttcccgcactagttagaggatgacaggcctgtgagt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)