BAC Information

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BAC

Clone NameMSMg01-434B14
Chromosome10 (Build37)
Map Location 23,976,319 - 23,976,647
singlet/doubletsinglet
Overlap geneMoxd1
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
Downstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434B14.T7 (MSMg01no434_b14.b1)MSMg01-434B14.TJ (MSMg01no434_b14.g1)
ACCAG525727AG525728
length7041,593
length of high quality
(start - end)
330 (71 - 400)---
definitionCHROMAT_FILE: MSMg01no434_b14.b1 PHD_FILE: MSMg01no434_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:24 2005CHROMAT_FILE: MSMg01no434_b14.g1 PHD_FILE: MSMg01no434_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTTCCCTTACATTCATACCATGAGTTTATCTGTTCAAACAAGACATA
TCGTTGGCCTAACAAATATTCAGTGATAGCTGGATATTTTAGAGAAGAAA
ATACTCACCATGTAACCCAGCATAATCATGGTCCCCCCCATCTTCTTGGA
AAATTACTTTCCTGGTTACCAATAGGGAGCTGAACGCATCTCTGAACTTG
AATCCTTTTACCATGATTTGCTCGTCAAGTTTAAGGGAAAGTTGTGAGCC
ATTCCTTAGTCCTCTTTATTATGTGGAAATAATACCTTCCTCGGGAGGTT
TTTAGACTAAGTGATAAACAAGATTTTGAGTGGTTTGGGGTTTTGGTTTG
TNTGTTTNNTNNNTTNTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTTTTTTNTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTNTTTTTTTCTTTTGNTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTNNTCTTTTTTTTTTTGTTTCCTGCTTGCTCTNTTTCTTCCGT
TTTT
TTTTCGCCGTTTNAATCGNCTNTCTGCGTGCTTGCGCTNTATGTCCCNTC
GACGAGCTCGTCTCCCACCTANCACTNTCATACTGTGATCTGTACAAGAA
CTCTACTTAGATGATNAGGCGAGCATCTCTCGCGCGGGCGACGATATCAC
TCGCACACTAGNACGCGACGCGACCTCCTCTCNCCCCCGGCCGCACNACA
CCACNGCCGCGACTACGACTCTCACGNNTAACCTATGACTGCGNCTCTAT
CGACAGCACACGTTCCTGCGCTGCACAAGCGCACATCACCATGTCTAGTA
TAANACATACTCCCTTGCGAGCTGCTCTCGCGCTCGCCTCATGTCTGCGA
CTCGTTTNTATGTGTAATCTATGCTGTGCGCTATACTGTGCTTAGGAGCG
CTGTTCATCAGTAGTAGCACTGTATGTATAATAGTGCGCTAGGAAAACGC
TGTAGCGTNGATCGACTCTCTTCATATCGTTCAGCTGTANTCTGCGTCAA
TCTGTCCATATACTAGCGCTAACGATCCTCTCTACTGCTTACTACACGCA
CCAGCCTACCATGGAGTAGTGCAACGGCATTACCACGTATCCACACGGCG
GTGGACTGCCGTGCCCTGCGCCGCGTCATACTCCTACATGAATGCTAGAT
CGATAGTACGATTCNTACGTCACAGTCCCACTCTGTGACCCNGACGCACC
ACTATATGACCGTCATCTCAGTACTGTAGCAAGTAATATATACGAACGCG
CCACTTGTCTCTACTNATAATCTCATTNCTCAGATCACGTGTGGTGCTAT
TCATAATCATAGTCAGACGCGCGTGCGCGCAGCACGGGTCGGACACGAGC
GGACAGCGCGACGCAATCAGCTGNGCTGCCGCGCAGACGCCATCAGTCAC
TCTACGCATCATCTACTACCACACTCCATCATCCGTCTCTGATACGCACA
GTCCACATGCATACATTCACGATTATCCAACATCGCATCGATCNTAGGCG
TACTCTGTTGCCATCACCGTCTCTATTACCTGACCACTACCGATAGACAC
CATACCCTACTTGCATCAGCACTCTTAGTATACGATCACGTGACGCCTNC
TCACACATGACCGATACCTGATACGAACATATGCATCGAGATGTACGCTA
TCGTCATCGCGCGATCGTATCAGGCTCGCTCACACTTCACGNTGCAGAGC
CACGACACTACTGTNTATATACCTGCCGATTTCTGGCGCTATTCCTATAC
ATATCCTTCATCTACCTCACACTGTTATACACATCTGCAATGACGTGACT
ACACATATGACGCCGTATGCGTCTCTGACATGAGGTATCTGTCTAGCTGG
TGTCACGAATCTTGACTCTCACTACCCCCACCTACCCGCGACCCANAGTC
GGCGACTGTCGCATNGCATGTTCTACCTAGGGCGAGTATTACTATACGTA
TCACGTAACTACGCTATCTATCGTGCTCTACGTTTATGACTCTGTACTGC
ATCGTATGCTCGTACGATACGCTACGTCTAGATCTCCATATCAGCCATGT
GCAGTCTGCGTCTATCTTACGAATGAAGTGTGACGGTGTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_b14.b1 MSMg01no434_b14.b1 CHROMAT_FILE:
MSMg01no434_b14.b1 PHD_FILE: MSMg01no434_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:24 2005
         (330 letters)



>mm_chr10_23976119_23976847
          Length = 729

 Score =  561 bits (290), Expect = e-164
 Identities = 320/330 (96%), Gaps = 1/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgagtttatctgttcaaacaagacatatcgttggcctaacaaatattcagtgatagc 60
           ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 201 ccatgagtttatctgtttaaacaagacatatcattggcctaacaaatactcagtgatagc 260

                                                                       
Query: 61  tggatattttagagaagaaaatactcaccatgtaacccagcataatcatggtccccccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tggatattttagagaagaaaatactcaccatgtaacccagcataatcatggtcccccc-a 319

                                                                       
Query: 121 tcttcttggaaaattactttcctggttaccaatagggagctgaacgcatctctgaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcttcttggaaaattactttcctggttaccaatagggagctgaacgcatctctgaacttg 379

                                                                       
Query: 181 aatccttttaccatgatttgctcgtcaagtttaagggaaagttgtgagccattccttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 aatccttttaccatgatttgctcgtcaagtttaagggaaagttgtaagccattccttagt 439

                                                                       
Query: 241 cctctttattatgtggaaataataccttcctcgggaggtttttagactaagtgataaaca 300
           | ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 440 cttctttattaagtggaaataataccttccttgggaggtttttagactaagggataaaca 499

                                         
Query: 301 agattttgagtggtttggggttttggtttg 330
           ||||||||||||||||||||||||| ||||
Sbjct: 500 agattttgagtggtttggggttttgttttg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space:   231120
Effective search space used:   231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)