BAC Information

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BAC

Clone NameMSMg01-434F10
Chromosome10 (Build37)
Map Location 50,435,890 - 50,436,399
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434F10.T7 (MSMg01no434_f10.b1)MSMg01-434F10.TJ (MSMg01no434_f10.g1)
ACCAG525907AG525908
length735991
length of high quality
(start - end)
514 (38 - 551)---
definitionCHROMAT_FILE: MSMg01no434_f10.b1 PHD_FILE: MSMg01no434_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:43 2005CHROMAT_FILE: MSMg01no434_f10.g1 PHD_FILE: MSMg01no434_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTATATTGCTTAAAAACTTCAACTTTAATTCATAGTATTCTTAGGGGCAT
GTCAACCTGTCTCTTATATTTTTGCTACTTCAGCAACCTGTCATCTACCT
TGTTTGCCTTTTGTCTCTTCCTATTTCATCCTTGCTTAGAGTGTATAAGG
CAGAGCTTCCTACAAATGCAGAAATAAGCTGCCCTCTGCGAGTTTAATAA
GTGGCATTCACACAATAGTAATGTGACTATTCCCATTCTAACTGAAAATA
ATTAAGACTATATAAGGAAAGTTGTTCATAATTCAAGTATGTGGTGTGAT
TTGTCCTTCTGACTCTAGTTGGGATAATACATTTATTGACATTTAAAAGT
GTGTTGTTATCAAGCTCTCTGTCTTCCCCTTTTGTTCTTCAGAATGCAGC
TAGAATTGTCCGTGCTCTCTTTGAAATTGCACTGAGGAAACGTTGGCCTA
CCATGACCTACAGGCTTTTGAATCTTAGTAAAGTCATTGACAAGAGACTC
TGGGGTTGGGCTAGCCCTTTGAGACAATTTTCTGTGTTACCACCACACAT
TCTAACCAGATTAGTAGAAAAAAACCTTACTGTGGATAAACTCCCAGACC
TGCAAAAAGATTGAATTATGTAGGAAAGTACCACAAAAATCCTTTACCTG
GATTTCAATATGTATATAAAATAATTTGATGGGAA
CTGATACGTCGAGAGGAGAACACGGTCCCACATCACGGGGGGGAGANNAN
NGAGGTTACCGAAAAACAGGNAGGAGGANAGNAGNGNNGAGCACACGAGC
ACCGCGGCAGGAGAGTTCTCCGCACTCAGACAACCCTACAACTAACNGCG
CGGACACGGCGGCAGCCTCGTTCGGCGAGGGCGCCCATTCGNCTACGGCC
GTGCCGCGGGAAGACGGATACACTCAGCAACGACAACCGAACACGCCTGA
CCAAAAAGCACCCAACGACACTTTTTTTCTCCGGGCGCGTCGTCGCACGC
GGCGCCGTCGGCGCCGCGCCCAGCAGCCGCCCTGACAAGAGCCCGCCACG
GCTTTGCTCATTTTCGCCCACGAGCACAGCGAGTCACGGAAACGGCGAGA
AAACGACCACCCCAACAGAAAATCAGAAATAGAAGACAAACTCCGGCAAT
AGAAAACCGAGAAAGTAGACACCGACAACGCGCTCGATCCTGCAAAACGC
GGCGAACGCGGATACAGCGATCCAAACAGACAGCACGTCCCGGAACACAT
AGCATAAAACGCACCTACAGCCCGCCACGCACACACACCGACTACAACAC
ACCCATCACACTCCACACACCACCGATAAACACACACACTATCACAGTAC
GAGACCCAATACAACACCTACCACGCAACCGATACCCACCACCCAGCGCT
ACGACACAAACTTACGCGGACCGGCACCAGCCGTCCTATTACCCTTCCCG
GAACCGTAACACGTCATCACGACACCACACAAATCGAATGCGCAACCACG
GTACATATCGAATCAGTATTGATACCTTGTTGCCCGCTGGAACAGTACCA
TTGCCACGTGGCGTCGGGCGACGCACGNATCGATCGCCACAGGACAACAC
ACGCCCACCACACCACCACACGACGTGGCCCTCACATCGTCCGAAACCCC
AAAACGGTCCGCAGAGCGATCACCGATACCATCACGTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_f10.b1 MSMg01no434_f10.b1 CHROMAT_FILE:
MSMg01no434_f10.b1 PHD_FILE: MSMg01no434_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:43 2005
         (514 letters)



>mm_chr10_50435686_50436599
          Length = 914

 Score =  948 bits (490), Expect = 0.0
 Identities = 505/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtatattgcttaaaaacttcaactttaattcatagtattcttaggggcatg 64
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctttgtaaattgcttaaaaacttcaacttcaattcatagtattcttaggggcatg 264

                                                                       
Query: 65  tcaacctgtctcttatatttttgctacttcagcaacctgtcatctaccttgtttgccttt 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagcctgtctcttatatttttgctacttcagcaacctgtcatctaccttgtttgccttt 324

                                                                       
Query: 125 tgtctcttcctatttcatccttgcttagagtgtataaggcagagcttcctacaaatgcag 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 325 tgtctcttcctatttcatccttgcttagagtgtgtaaggcagagcttcctacaaatgtag 384

                                                                       
Query: 185 aaataagctgccctctgcgagtttaataagtggcattcacacaatagtaatgtgactatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaataagctgccctctgcgagtttaataagtggcattcacacaatagtaatgtgactatt 444

                                                                       
Query: 245 cccattctaactgaaaataattaagactatataaggaaagttgttcataattcaagtatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccattctaactgaaaataattaagactatataaggaaagttgttcataattcaagtatg 504

                                                                       
Query: 305 tggtgtgatttgtccttctgactctagttgggataatacatttattgacatttaaaagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtgtgatttgtccttctgactctagttgggataatacatttattgacatttaaaagtg 564

                                                                       
Query: 365 tgttgttatcaagctctctgtcttccccttttgttcttcagaatgcagctagaattgtcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttgttatcaagctctctgtcttccccttttgttcttcagaatgcagctagaattgtcc 624

                                                                       
Query: 425 gtgctctctttgaaattgcactgaggaaacgttggcctaccatgacctacaggcttttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgctctctttgaaattgcactgaggaaacgttggcctaccatgacctacaggcttttga 684

                                         
Query: 485 atcttagtaaagtcattgacaagagactct 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 atcttagtaaagtcattgacaagagactct 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)