BAC Information

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BAC

Clone NameMSMg01-434M12
Chromosome10 (Build37)
Map Location 27,312,934 - 27,313,179
singlet/doubletsinglet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M12.T7 (MSMg01no434_m12.b1)MSMg01-434M12.TJ (MSMg01no434_m12.g1)
ACCAG526241AG526242
length768756
length of high quality
(start - end)
245 (62 - 306)246 (66 - 311)
definitionCHROMAT_FILE: MSMg01no434_m12.b1 PHD_FILE: MSMg01no434_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:18 2005CHROMAT_FILE: MSMg01no434_m12.g1 PHD_FILE: MSMg01no434_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTTCTAAGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTATTTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCTTGTATTTTATATCTTCTAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGCGTGTCTGGTTTTATGTGAAGTTCCTTGATCCACTTA
TATTTGACCTTATTACTTGGATATTTTTATGCTTCTACCCACTCTCTTCT
TCCTGAAACATCCTTTTTTGTCCTTATCTATTGTCGCCTATGCTCTTTCT
TTCTTTGTATGCTTTTATTCCTCTTGTCTTATATTTTTCTTTTCTTTACT
CGTGTTTTCATTTTTTTTTGTTTTTGCCTCTTTTATTTCTTTCTTCCTTA
TTTTTCTCCTTTTTTTCTTTCTTACTTCTTTTCTTTTCCTTCTTTTCTTT
TTCATCTACCTTCGGCCCGTATTTTTTCTTTCTTACCTTGATCCTCTTCC
TCTTATCTTTCTTTTTTCTTCTCTTTTCTATATTTCTGTATTATCCTAAT
TTTTATATCCTTTTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTATTGTTGAGTAAAATATTTGAAATTCCTTTT
ATAATGAAACAGAATGGAAGGTTTCATGACGTCAAAGGAATGTAGTGCAC
AAAATACAATTCCAATGAATGGTTTACAAAAAGAATTCAGTGAAATAATT
TCACTGTGAGACTCTGGTATTGTTCAAATACACATGCTAGATTTGAACAT
CAGTAATTTACAGAGTGAATTATAATAAATTCAACATCCTAGTGCAGAAA
ACCATACACAATTTTTTTATGAAAGGACAAAATATGTTGATAAGAAATAA
GGAAGTATAGATTCTAAGTTGTTTCTAACTATTTATGAATGGACTATAAA
AATAAATCATAGATGTGGATAAGGGACAGTTATCTTAATCACATGGCAAA
TGGATATATGTTTCATTTGAGAGTATGAGAAATCAATACATCTTACTACT
TTCTTTAAAACTTGTATTTTATGTTTGTTATTGCCATATTCTTAAATACT
TCCTAACACTATCATGCATAACTTTTGTATATCATTATCCCCATATCCAT
GTTATATTTCTCATAATTTCTATACTTTTCCCTCACTTCCATATTCCCCC
CACTCTCTTTTTTTTTTTTTCTCTACTCCCTTTTCCTACTCTCCTCCTCT
CTTTCTTCCTCATTCTACATTACATTCATACCATATTTTCCATCCATCAT
ACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m12.g1 MSMg01no434_m12.g1 CHROMAT_FILE:
MSMg01no434_m12.g1 PHD_FILE: MSMg01no434_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:18 2005
         (246 letters)



>mm_chr10_27312734_27313379
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttattgttgagtaaaatatttgaaattccttttataatgaaacagaatggaaggtttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tcttattgttgagtaaaatatttgaaattccttttataatgaaacagaatggaaggcttc 260

                                                                       
Query: 61  atgacgtcaaaggaatgtagtgcacaaaatacaattccaatgaatggtttacaaaaagaa 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 atgacgtcaaaggaatgtagtgcacagaatacaattccaatgagtggtttacaaaaagaa 320

                                                                       
Query: 121 ttcagtgaaataatttcactgtgagactctggtattgttcaaatacacatgctagatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttcagtgaaataatttcactgtgagactctggtattgttcaaatacacatgctagttttg 380

                                                                       
Query: 181 aacatcagtaatttacagagtgaattataataaattcaacatcctagtgcagaaaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcagtaatttacagagtgaattataataaattcaacatcctagtgcagaaaaccat 440

                 
Query: 241 acacaa 246
           ||||||
Sbjct: 441 acacaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)