BAC Information

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BAC

Clone NameMSMg01-435F14
Chromosome10 (Build37)
Map Location 43,483,164 - 43,483,586
singlet/doubletsinglet
Overlap gene1700027J07Rik
Upstream geneSec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418
Downstream geneEG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F14.T7 (MSMg01no435_f14.b1)MSMg01-435F14.TJ (MSMg01no435_f14.g1)
ACCAG526674AG526675
length788821
length of high quality
(start - end)
423 (69 - 491)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no435_f14.b1 PHD_FILE: MSMg01no435_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:03 2005CHROMAT_FILE: MSMg01no435_f14.g1 PHD_FILE: MSMg01no435_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACCAATTACAGATCAAAGATATTTAGACAAAAATGCTAAGTAATCT
AAAGTATATGGGAGGCTGTGTATATGGAGTTCTGTGTGGCACCTCTGTGC
AGTTAGTGAGTACCTAGGCACCTGGGCATCCAAGATCCCCCTCTCAGACG
CAGGCGCCATCTGTACTCCTCTGGAGATGACGAGCTTCGATTCCATCCTC
TTCAAAGGTTCCTTCATTGCCAACGACTGCGCTTCTGGCTCCATCTGTCC
CACCAGACTGAGGCTATTATTTCCCAAGTTGGCTCTGACCTGTGTGCTGA
GCCTATGGCAAGGAAATTGAAGTCTCAATGGCCACCCCAACACGTCACAA
GCATGGATGAGTGTGGAGCATTGGGTTATACACAGACAGGCTGGCCTCCA
GTCGAGCTGAGATATTGAACCCCTGGACCCAGTGATGATAACTTACCTAC
TCGTTACGGAAGGAGGTCTCTCCTGCCCCCGTAAATCTTGGTCCTGCCTA
AATTACCACTCCCCTTTCCCTCCCTTATAACAATTTGCCCACCAACCTTT
AATGCCATTGTTCCAATTCTTCGTTCCCCCCCTTTTTTCCCCTTTTTTTT
ATTCTTCAATACTACCCCTTCTTTTTATTATCCCCCTTTCTTTTCTCCCC
CTTTTTTTTCCTTTTTCTTTCCCTCTTGCTCCTATTTTTTTTTTTTTTTC
CCCCGGTTTTTTTATCCTATAACACCTCCCCCTCCCCG
ATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTAAT
AAAGTGTTCCCGTAAAACAGACTGTTAAGAAGGATTCAACTGTGTGAATT
CAGAACTCTTCAGCTGGGGAACAGGGTACTCGTAAGTATAGCTTTACAAG
GTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAA
GTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAA
CGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAG
GTAAGTCTGGTCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCAGAA
GTAAAGTGGGAAATAGCTTTACAAGGCATGTTTGGTCTTGAACTTTCTCT
AGTGTTAGGAGCCTTTTTTGTCCCTTTTCACATGTTACAACGGGGTTTTA
GGTTGTACCGAACATCCTTGAAGTAATTCATGGTCCTCCTTTTTCTACTC
AATCCGCGTTATTTTTCATTCCTTCTTTTTTTTTGATTTTTTTGCCTTGC
TGTCCCCGCCTTTCTGTTCTTTTTCTTTTTCTTCTTATCTTCCCCTTCTT
TCTTTTTTTCTTCTTTTCGCCATACTTTCTCCCCCTTCTTCTCATTCTCC
CCTTGTCTTTCTTCTCTCCCCTTTTTTTATTTTCACTTTTCTTATTTGCC
CCTCTTTTCTTTCTTATATTTTCTATTATCGTTTACATTCACCGCCCTAT
CTATATGTATTTATCACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f14.b1 MSMg01no435_f14.b1 CHROMAT_FILE:
MSMg01no435_f14.b1 PHD_FILE: MSMg01no435_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:03 2005
         (423 letters)



>mm_chr10_43483044_43483866
          Length = 823

 Score =  750 bits (388), Expect = 0.0
 Identities = 415/424 (97%), Gaps = 2/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagatatttagacaaaaatgctaagtaatctaaagtatatgggaggctgtgtatatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaagatatttagacaaaaatgctaagtaatctaaagtatatgggaggctgtgtatatgga 484

                                                                       
Query: 61  gttctgtgtggcacctctgtgcagttagtgagtacctaggcacctgggcatccaagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttctgtgtggcacctctgtgcagttagtgagtacctaggcacctgggcatccaagatcc 424

                                                                       
Query: 121 ccctctcagacgcaggcgccatctgtactcctctggagatgacgagcttcgattccatcc 180
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccctctcagatgcaggctccatctgtactcctctggagatgacgagcttcgattccatcc 364

                                                                       
Query: 181 tcttcaaaggttccttcattgccaacgactgcgcttctggctccatctgtcccaccagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcttcaaaggttccttcattgccaacgactgcgcttctggctccatctgtcccaccagac 304

                                                                       
Query: 241 tgaggctattatttcccaagttggctctgacctgtgtgctgagcctatggcaaggaaatt 300
           ||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 tgaggctaaaacttcccaagttggctctgacctgtatgctgagcctatggcaaggaaatt 244

                                                                       
Query: 301 gaagtct-caatggccaccccaacacgtcacaagcatggatgagtgtggagcattgggtt 359
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaagt-tgcaatggccaccccaacacgtcacaagcatggatgagtgtggagcattgggtt 185

                                                                       
Query: 360 atacacagacaggctggcctccagtcgagctgagatattgaacccctggacccagtgatg 419
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atacacagacaggctggcttccagtcgagctgagatattgaacccctggacccagtgatg 125

               
Query: 420 ataa 423
           ||||
Sbjct: 124 ataa 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)