Query= MSMg01no435_m13.b1 MSMg01no435_m13.b1 CHROMAT_FILE:
MSMg01no435_m13.b1 PHD_FILE: MSMg01no435_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:39 2005
(248 letters)
>mm_chr10_26265804_26266451
Length = 648
Score = 391 bits (202), Expect = e-113
Identities = 231/248 (93%), Gaps = 12/248 (4%)
Strand = Plus / Minus
Query: 1 cacatgaaccatcatcagaaattccagggcatgcccacacaaaccaccatttctaaaaat 60
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 338 cacatgaaccaccatcagaaattccaggacatgcccacacgaaccaccatttctaaaaat 279
Query: 61 actgactattatggctcctactgccttttaaacagggacaagatcttggtcccaaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actgactattatggctcctactgccttttaaacagggacaagatcttggtcccaaagaaa 219
Query: 121 tcttggttttctttgtgtgtgtgtgttttttttttttttttacactgactttctaaatcc 180
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 218 tcttggttttctttgtg------------ttttttttttttacactgactttctaaatcc 171
Query: 181 ccattgtaccacctcttctttgtctactcaaaagctcaaaaccaaagtcattttcaaaat 240
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ccactgtaccccctcttctttgtctactcaaaagctcaaaaccaaagtcattttcaaaat 111
Query: 241 gtaataga 248
||||||||
Sbjct: 110 gtaataga 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no435_m13.g1 MSMg01no435_m13.g1 CHROMAT_FILE:
MSMg01no435_m13.g1 PHD_FILE: MSMg01no435_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:39 2005
(481 letters)
>mm_chr10_26089576_26090454
Length = 879
Score = 861 bits (445), Expect = 0.0
Identities = 473/485 (97%), Gaps = 6/485 (1%)
Strand = Plus / Plus
Query: 1 agcacacagaaactacactggccaccccgctctccccaggcccatgctcttatttgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacacagaaactacactggccaccccgctctccccaggcccatgctcttatttgcatg 260
Query: 61 ggcttatagctgcttctgcccactgtctctgcagcatcatccacacactgacaaaaacta 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ggcttatagctgcttctgcccactgtctctgcagcaccatccacacactgacaaaaacta 320
Query: 121 aatctatgaattctaccggctgctctacttaagacaatccacaaacagaagtgactataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aatctatgaattctaccggctgctctacttaagacaatccacaaacagaagtgacaataa 380
Query: 181 actagtgttcacaatcacttttactctggccatcattcagtttcatttgtaatccacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagtgttcacaatcacttttactctggccatcattcagtttcatttgtaatccacctg 440
Query: 241 actcttataagataattagttctgctcagaaaaagccgagtccagagagattgttcagag 300
|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 actcgaagaagataattagttctgctcagaaaa--ccgagtccagagagattgttcagag 498
Query: 301 ggcaaaggtacctgacaagctgacttcaacccccaggacccatataaagatggaaaggaa 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtaaaggtacctgacaagctgacttcaacccccaggacccatataaagatggaaaggaa 558
Query: 361 gaagtaactccaaagatgttttctaactgtcatgcatgtaatatggtgtgccacttttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaagtaactccaaagatgttttctaactgtcatgcatgtaatatggtgtgccacttttac 618
Query: 421 aacctctctgctctctgtctgtctgtctgtctgtct----ttctctttacacacacacac 476
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 aacctctctgctctctgtctgtctgtctgtctgtctgtctttctctttacacacacacac 678
Query: 477 acaca 481
|||||
Sbjct: 679 acaca 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 879
Length adjustment: 10
Effective length of query: 471
Effective length of database: 869
Effective search space: 409299
Effective search space used: 409299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
