BAC Information

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BAC

Clone NameMSMg01-435O10
Chromosome10 (Build37)
Map Location 30,145,156 - 30,145,329
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O10.T7 (MSMg01no435_o10.b1)MSMg01-435O10.TJ (MSMg01no435_o10.g1)
ACCAG527097AG527098
length786776
length of high quality
(start - end)
459 (46 - 504)174 (76 - 249)
definitionCHROMAT_FILE: MSMg01no435_o10.b1 PHD_FILE: MSMg01no435_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:49 2005CHROMAT_FILE: MSMg01no435_o10.g1 PHD_FILE: MSMg01no435_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAATTTACTCTCAAAAATGGACGCTCCGTGGAAACATAAACTA
AATAGAGACACATTGAAACTAACAGAAGTTATGGACCAAAGGAGTCTAAC
AGATACCTATAGAATATTTAATCCTAAAACAAAAGAAGTTTCCTTCTTCT
CAGCACCTCATGGTACCTTCTCCAAAACTGAAGATATAATCTTTCACAAA
ACAGGCCTCAACAGATACAAGAAGATTGAAATAATCACATGCATTCTATC
AGATAACCCCAGTCTAAGGCTGGCCTTCAATAGCAAGAACAACAACAAAA
CCAGAAAGCTCACATACACATGGAAGTTGAATAACACCCTACTCAATGAT
AATTGGTCAAGGAAGAAATAAAGAAAGAAATTAAAGACTTTCTAGAATTC
AGTGAAAATGAAGGCACAATATACCCAACTTGTGGGACACAATGAAAGCA
GTGCTAAGGGGAAAACTCAGCTCTAAGTGCCTCCAAAAAGAAACTGGAAA
GAGCATACACTACCAGCTTAACAGCNCCCCTGAGNGAAGAAAAAGAACCC
CAAGAAGGCTATTCCCCCTCCGAGGGATATTTGGGAGCGCGAAATTAACC
AAACTCGGGGGGTGGAATCCCCCCCCGGGGGAATTATAAGAATCTTTCCT
CGGGATTTATCACAACCTNGGGGGTGGGTCTTTTGGAAATAAACAACGGG
GGAAGATAAAAACCTTATGCCCCCCTCTAACCGGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAGTTGCCCAACTTGAGTGGGTT
CTTGGTGTGGTTTCCCTTTTCACCAACAGTAGTACTTGTATTTTTTTAAT
TATAGCAAGTAGGTGATGAGAGATGTGGAGTGTTATAAGTGAATAATTTC
AACAATATTTCTAANCATTTTCATCAGTCTTCTGAGTTTTAAAATAAATC
TTAAGGNATCAATATCAATAGCTGGAAAAAAGTATTAAAGTCTCAGTTTT
ATTGTTGTAGATCCCTTTTTTTTTTTCTTACGGCAGCAGTTTATAAAAGG
GACTTCTTGTTTTTATCATTCCCAGCTTTCGTGCGACTATGATAAGATAT
GTTGTTCTTTGAACACCCCCACATCTTGATTCTATATGATCCCCTATGAT
GCATGCTCGCGAGATAGAATTTTCTTTTCTTTTCTTTTTTTTCCTCTCGT
CCCTATTCATTTATTTTCTTTCTCCCTCTCCTTCGTCCCTCACTCCTTCC
TTAAGCTTATTTTTTTTTTTTCTTTTTCCCCCCATTTTTCCCCCCTCCCC
TTTTTTATTCCCCCTTCTTTTTTTCCCCCTCCCCCTCTACTTCCCCCTCT
TCTTTTTTTATTTGAGACCTACGTCACCCCCTCTTCCTTCTCTTACTTTT
TTTTCTATTTGTCTCCTTAACCTAATTTCATACACTTCTATGTCTATTTA
TATCCCATCCTCACCCTATTTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o10.g1 MSMg01no435_o10.g1 CHROMAT_FILE:
MSMg01no435_o10.g1 PHD_FILE: MSMg01no435_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:49 2005
         (174 letters)



>mm_chr10_30144956_30145529
          Length = 574

 Score =  323 bits (167), Expect = 4e-93
 Identities = 172/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagttgcccaacttgagtgggttcttggtgtggtttcccttttcaccaacagtagtac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 374 ttgagttgcccaacttgagtgggttcttggtatggtttcccttttcaccaacagtagtac 315

                                                                       
Query: 61  ttgtatttttttaattatagcaagtaggtgatgagagatgtggagtgttataagtgaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgtatttttttaattatagcaagtaggtgatgagagatgtggagtgttataagtgaata 255

                                                                 
Query: 121 atttcaacaatatttctaancattttcatcagtcttctgagttttaaaataaat 174
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 254 atttcaacaatatttctaagcattttcatcagtcttctgagttttaaaataaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)