BAC Information

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BAC

Clone NameMSMg01-436D21
Chromosome10 (Build37)
Map Location 104,284,089 - 104,284,446
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436D21.T7 (MSMg01no436_d21.b1)MSMg01-436D21.TJ (MSMg01no436_d21.g1)
ACCAG527356AG527357
length759750
length of high quality
(start - end)		541 (48 - 588)518 (73 - 590)
definitionCHROMAT_FILE: MSMg01no436_d21.b1 PHD_FILE: MSMg01no436_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:15 2005CHROMAT_FILE: MSMg01no436_d21.g1 PHD_FILE: MSMg01no436_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCACCCCATCCCCTCTACCATTTCCCTCTGAGAGGGTACTCA
TCCCCCTGCATCCCACTTCCCTGGGGTGTCAAGTTGCTACAGGATTAGGT
GCATCATCTCCCACCCAGACCAGACAAAACAATCCACTGTTACATATATG
CCAGGTGAAGGGCATGGACCAGCCCCTATTTGCTCTTTGGTTGGTGGCTT
AATCTCTGGGAGCTCCCAGAGATATGGGTTAGTAGATACTGTTGGTCTTC
GTATGGGCTTGCCATCCTCTTGAGCAACTTCAATCCTTTTCCTAACTTTT
TCTTAGGGGTCCCAACCTCAGTCCAATGGTTGGCTATAAGTATCTGCATA
TGTCTCAGTCAGCTGCTGGTAGAGCCTCTCAGAGGACAACCATACTAGGC
TCCAGTCTGTAAGCACACCATGACATTAGTAATAGTGTTAGGGTTTGATG
CCTGCCCATGAGATGGATCCCAAGTTGGGGCAATCTTGGGATGGCCTTTC
CTTTGATCTCTGCTACATTTTTGTCCCCGCATTTCTTTTAGATGAGACAA
ATTCTAGGTCTGGNNGCCTGTTTATCTGCTGGAGGTGGGCTCTTAGGTTT
CATCTCCCTGTTGTTGAACAAGTTGGCTAANGGCATCATTGATTCCTTGG
GACTTTCTAGAGGTCCCCCTACTCCCACCCCCTGGAGTATATAATACCAT
ACATAAGAT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAGGTCCTACACCTTCTTGTTTAGTT
TTAATCTTAAATTTTCTTAATGACTATTATAAATTAAAGTATTCATATTA
TCCGCATACATCAGTCCTTAGCATATTCCCAAAAGATTGCTATTCCCTTC
TAGATACTTGCTCAGCCATATGTACTGTTGCTATGTTCACTAGGAATACA
TTCCAGCTAGGAAATGTATTCAACCTAATGCCCTACAACTGACGAATGGA
TAATTAAAATGTGGTATGTATAAACTATAGAATACTGCTCAGCTCTAAAG
TAAAATAAAGTCATAACCTTTGTAGATAAATGGCTGGAATTGTATTCCTC
TGGCTGGAATACAGATACACTCTTAGTACACAATAAGAATTTATTACATA
ATAAGAATTTAGTATCACTTTTTTATTAATTTACATCTTTAATTTACTTC
CTGATCATAGCTTCCCCTCAGATCTCTCATGCCAGTCTCCCCATCTCCCT
ATGTCTCCCCTTCCCTCTTGCTATGTCTCACTCCCTTTGTCCTCAGAGAA
GGGGGGCCTCTCATGGTTAGCAATCTGTATATCAAGGTGGAGTAGGCCCT
GGTGCATCCTAAACTAGGGCATCCAGCTAGGGGATAGGACCCATTTCTAA
GGTTTAAATCTACCTTATTTTTGGGAGAGAAGTCTTTTACTTCGGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_d21.g1 MSMg01no436_d21.g1 CHROMAT_FILE:
MSMg01no436_d21.g1 PHD_FILE: MSMg01no436_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:16 2005
         (518 letters)



>mm_chr10_104283529_104284446
          Length = 918

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 161 atgttcactaggaatacattccagctaggaaatgtattcaacctaatgccctacaactga 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 atgttcactaggaatacattccagctaggaaatgtattcaacctaatgccctacaactga 859

                                                                       
Query: 221 cgaatggataattaaaatgtggtatgtataaactatagaatactgctcagctctaaagta 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cgaatggataattaaaatgtggtatgtataaactatagaatactgctcagctctaaagta 799

                                                                       
Query: 281 aaataaagtcataacctttgtagataaatggctggaattgtattcctctggctggaatac 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaataaagtcataacctttgtagataaatggctggaattgtattcctctggctggaatac 739

                                                                       
Query: 341 agatacactcttagtacacaataagaatttattacataataagaatttagtatcactttt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agatacactcttagtacacaataagaatttattacataataagaatttagtatcactttt 679

                                                                       
Query: 401 ttattaatttacatctttaatttacttcctgatcatagcttcccctcagatctctcatgc 460
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 678 ttattaacttacatctttaatttacttcctgatcataacttcccctcagatctctcatga 619

                                                                     
Query: 461 cagtctccccatctccctatgtctccccttccctcttgctatgtctcactccctttgt 518
           |||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 618 cagtctccccatttccctatgtctccctttccctctcactatgtctcactccctttgt 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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