BAC Information

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BAC

Clone NameMSMg01-436M21
Chromosome10 (Build37)
Map Location 21,421,325 - 21,560,406
singlet/doubletdoublet
Overlap geneLOC100039936, LOC628133
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436M21.T7 (MSMg01no436_m21.b1)MSMg01-436M21.TJ (MSMg01no436_m21.g1)
ACCAG527785AG527786
length769760
length of high quality
(start - end)		490 (72 - 561)566 (75 - 640)
definitionCHROMAT_FILE: MSMg01no436_m21.b1 PHD_FILE: MSMg01no436_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:58 2005CHROMAT_FILE: MSMg01no436_m21.g1 PHD_FILE: MSMg01no436_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,559,921 - 21,560,406)(21,421,325 - 21,421,890)
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCAGAGATTCTCTTCTCCAGATATCCCGAGTGCTGGGGTTAAAGCC
TTGCACCACCACACTGAGCTTGATTTGATTTTTTTCCTAGTAAACCTTTT
CCTCACTTTTGTGTCAAGCCTTGACCACAAGACATTCTTCTCCAAGCTAC
TGCCACATCCGTGTACTCGAATACACTAGCTGCCCTAACAAAGGTCTTCA
AACCTGGGGCCTGTGGAGTACAGACAATGTTCCTCAGGTATGGCAGCCAG
ACATTCAAGACATGGCTGAGCTTCGTAGAGAATGCCTGTAGTCTGGGTAC
TCAGGAGGCTGAGGCAGGAGGGTGAGGAATTCAGAGCAAGTTCAGGTTGT
ATGTATAGACATAAAAATAGTACAGATGCAGAAAGGAGTACTATTAGGGA
AAGGAAAGAAAAAGAAAAGGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAG
GGAAAGGGAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGGAAAGGG
AAAGGAAGGTGATGTGAGTGAGGGAATAAGCNTCCCCCCCTTTTTTTCTT
TTTCCTTCCTTTTTCTCTTTTTTTTCTTCTTTTCCCCCTTCTTTTTTTTT
TTCTTTTCTCCTCCTTTTCTTTTTTCCTTTCTCTTTTTGTTTTGCTTTTC
CTTTCTTTCCTTGCCCTTCCCTTTTTTCACTTTCCTCCCTTTCTTCTTAT
ACTCTTTTTTTTATCCCTT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTTTAATGAAGCTGCAGTGGCTTT
TACCCTTATTTCCTTTGTGTTTATTCTGGGTAGTGCCTGCAAGAAGACTA
TTTTGGTTAAGGACACTGTTCTTGTCCTAAGGAGGAAGTGAGCACACTGA
GCCTTGTCTCCAGCCCTTGAGCAGCTAGACAGGTCAGACAGACAGCTCTG
TCAGCCAGGCTCCAGGAAGGGCTCTCCTGTCTCATGGAACAACCAAACAA
TTGTTACTATTTACAATGGCCCATATGCCGAAGTATTCTTAGAACAATGA
GGAAAGGGAAAGTCGGCCACCAGGCAGGAAAGAGGGCTTTCAAGCCACAG
CAAGCTCAGAGAATGTGCATGCCCTTTAAATGTAAACAGCTGGCTGCAGA
GCTTATCCAAATAACAATGTACAGGGTGCTTGCCATGTGCCGGACACTTG
ACATAGCCATTGTCCCTGATCCCATAACCATTTCACCAGACCAGCATGAT
CCCAATCTAATCTGTGAAGAAATCAAGGCAAAGAGAGATGCTAACAAGGG
AAACACGTTTCCAAGGGTGTGGAACGTTGTAGCGAAGCTACAACTCGTCC
AAATCAGAGCCTATGTATTCTTAGCTACCACTCTTTAAAATTAAAAATAA
AGAAAAAGTTTACACTTCTTTGAAAAGGAATCCATAATCTTGTTACTAAA
AGCACCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_m21.b1 MSMg01no436_m21.b1 CHROMAT_FILE:
MSMg01no436_m21.b1 PHD_FILE: MSMg01no436_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:58 2005
         (490 letters)



>mm_chr10_21559915_21560804
          Length = 890

 Score =  893 bits (462), Expect = 0.0
 Identities = 480/486 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatatcccgagtgctggggttaaagccttgcaccaccacactgagcttgatttgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cagatatcccgagtgctggggttaaagccttgcaccaccacactgagcttgatttgattt 433

                                                                       
Query: 61  ttttcctagtaaaccttttcctcacttttgtgtcaagccttgaccacaagacattcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttttcctagtaaaccttttcctcacttttgtgtcaagccttgaccacaagacattcttct 373

                                                                       
Query: 121 ccaagctactgccacatccgtgtactcgaatacactagctgccctaacaaaggtcttcaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 ccaagctactgccacatccgtgtactcgaatacactagctgccctaacaaagatcttcaa 313

                                                                       
Query: 181 acctggggcctgtggagtacagacaatgttcctcaggtatggcagccagacattcaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acctggggcctgtggagtacagacaatgttcctcaggtatggcagccagacattcaagac 253

                                                                       
Query: 241 atggctgagcttcgtagagaatgcctgtagtctgggtactcaggaggctgaggcaggagg 300
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 atggctgagcttggtagagaatgcctgtagtccgggtactcaggaggctgaggcaggagg 193

                                                                       
Query: 301 gtgaggaattcagagcaagttcaggttgtatgtatagacataaaaatagtacagatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtgaggaattcagagcaagttcaggttgtatgtatagacataaaaatagtacagatgcag 133

                                                                       
Query: 361 aaaggagtactattagggaaaggaaagaaaaagaaaaggggaaagggaaagggaaaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 aaaggagtactattagggaaaggaaagaaaaagaaaaggggaaagggaaagggaaaggga 73

                                                                       
Query: 421 aagggaaagggaaagggaaaggaaaaggaaaaggaaaaggaaaaggaaaagggaaaggga 480
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct: 72  aagggaaagggaaagggaaagggaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaa 13

                 
Query: 481 aaggaa 486
           ||||||
Sbjct: 12  aaggaa 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_m21.g1 MSMg01no436_m21.g1 CHROMAT_FILE:
MSMg01no436_m21.g1 PHD_FILE: MSMg01no436_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:59 2005
         (566 letters)



>mm_chr10_21421125_21422090
          Length = 966

 Score = 1087 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactttaatgaagctgcagtggcttttacccttatttcctttgtgtttattctgggtagt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactttaatgaggctgcagtggcttttacccttatttcctttgtgtttattctgggtagt 260

                                                                       
Query: 61  gcctgcaagaagactattttggttaaggacactgttcttgtcctaaggaggaagtgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgcaagaagactattttggttaaggacactgttcttgtcctaaggaggaagtgagca 320

                                                                       
Query: 121 cactgagccttgtctccagcccttgagcagctagacaggtcagacagacagctctgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgagccttgtctccagcccttgagcagctagacaggtcagacagacagctctgtcag 380

                                                                       
Query: 181 ccaggctccaggaagggctctcctgtctcatggaacaaccaaacaattgttactatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggctccaggaagggctctcctgtctcatggaacaaccaaacaattgttactatttac 440

                                                                       
Query: 241 aatggcccatatgccgaagtattcttagaacaatgaggaaagggaaagtcggccaccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggcccatatgccgaagtattcttagaacaatgaggaaagggaaagtcggccaccagg 500

                                                                       
Query: 301 caggaaagagggctttcaagccacagcaagctcagagaatgtgcatgccctttaaatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaaagagggctttcaagccacagcaagctcagagaatgtgcatgccctttaaatgta 560

                                                                       
Query: 361 aacagctggctgcagagcttatccaaataacaatgtacagggtgcttgccatgtgccgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagctggctgcagagcttatccaaataacaatgtacagggtgcttgccatgtgccgga 620

                                                                       
Query: 421 cacttgacatagccattgtccctgatcccataaccatttcaccagaccagcatgatccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttgacatagccattgtccctgatcccataaccatttcaccagaccagcatgatccca 680

                                                                       
Query: 481 atctaatctgtgaagaaatcaaggcaaagagagatgctaacaagggaaacacgtttccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctaatctgtgaagaaatcaaggcaaagagagatgctaacaagggaaacacgtttccaa 740

                                     
Query: 541 gggtgtggaacgttgtagcgaagcta 566
           ||||||||||||||||||||||||||
Sbjct: 741 gggtgtggaacgttgtagcgaagcta 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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