BAC Information

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BAC

Clone NameMSMg01-436P22
Chromosome10 (Build37)
Map Location 63,673,497 - 63,837,485
singlet/doubletdoublet
Overlap geneCtnna3
Upstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Lrrtm3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436P22.T7 (MSMg01no436_p22.b1)MSMg01-436P22.TJ (MSMg01no436_p22.g1)
ACCAG527931AG527932
length763781
length of high quality
(start - end)		557 (78 - 634)434 (76 - 509)
definitionCHROMAT_FILE: MSMg01no436_p22.b1 PHD_FILE: MSMg01no436_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:13 2005CHROMAT_FILE: MSMg01no436_p22.g1 PHD_FILE: MSMg01no436_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,837,162 - 63,837,485)(63,673,497 - 63,673,930)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGTTGTTTGACGAGAATTTACACCACTAATTTATGAAACCAGTG
TGATACCAAGCAACAATCCTTAAAAGTATCACTCTATCAATAGCTAAATG
TAGTTTTGACCCCTTGTACTGAAAACATCTCTCTGCAACAGCAGGAGACC
ACTAGAGAAAACCACTGTCAATGAAAATGTCAAGTTGTAGTCACATCTAC
AAAACACACACATCTAAGGCTCTGGGGATATTGCAGAAGAGGGGCAGGAA
ACTGTAAGATCTAGAGATCCAGGGAGTCAGCTGTGACACTGTGTCTTCTA
GGAATGTGAAAATCTACACCCATAAAGCCATCAACCTGAGTTCTCAAATA
TGAGCTGAGCAAGGACCACAGTGGGCATGCCAAAGTAAACAGAGAAAAGC
CCACAAAGCCTCAATACTGTGGGCAACTCAGAAGAGGTGGTTGGTCTTCC
CCAGGAAAGATGCTAATATTTTTAAAAAGAAGCCTCTTTCTGCAAGAGCA
TGACCATGATACATACTCAATAACATAAAATAATTATATATTAGGCAAAT
AATAGTGGTTTCTCTTCCTGATTTATCTCCTGCAAGAGCTGTGTTGCTCC
ATTTCTCACAAATCTGTGTCATATTAATCACCATATTTTCAACCTCCCCA
ATATTGTGTCCTGGAAAATACATCATTCTCTCTCTCTTTTCCTCCCTCCC
CTTACATTCCGGC

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTCCAGTTCCCTTCTTCTCCCAG
GGCCACTGATCTTTCACTATGGATGCATGCTGTTGGCTTTTGAAAACCAA
CAGCTTTGTGTATGACAATAGGGAAAGCTGAAATGGCAAAATCTTTATTT
TTTTATTTTTTGGTTTTGTTTTGTTACAACACAGGTTTTCATTGTTGTTG
TTGTGTGTGTTTTACCCCTCTTTAGTGCTCACACCCCAGACTGCTCTAGA
CCTTTGGCTAATATCCAGAGTTCAGAGAAATCTAGTTATGACTCTTTTGC
TTTCATTCTTCTACTTGTATAAAGAAGAAAATCTTGAGAATCATCACTGT
ACTGTTTTTGTAAAAGTTGTTATTTTGTGTTAATATGTTGAATATCAATT
AGCTGAAAGTTTGCATGTGTGCTTCCTGGATATACACATGCTCTTGTGTT
AATTTTCCAGTGTTCTTCTTTTCCTTCTGAACTATTAAATGTCTTCATTA
TTTTAATGGTATAAAAACTTAAAATGCCCCAGGGGATCAAACATTTTCCC
CTAGAAATTCCATGGCCTTGAGAAAAATTTATATTAAAAATAAAAGGAGG
TTTGTAAAAATATTCCCCCAAGCCTTGACCCCAGGGAAATCCGAAAGGAA
TTTTTTTTTGAAATTTTTCCTCCCCCCCCCCCCTTATCCCCTTTTTGTCC
AATTTCCTTTAAAAAGGGGATCCTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_p22.b1 MSMg01no436_p22.b1 CHROMAT_FILE:
MSMg01no436_p22.b1 PHD_FILE: MSMg01no436_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
         (557 letters)



>mm_chr10_63836529_63837485
          Length = 957

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                       
Query: 234 ctagagatccagggagtcagctgtgacactgtgtcttctaggaatgtgaaaatctacacc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ctagagatccagggagtcagctgtgacactgtgtcttctaggaatgtgaaaatctacacc 898

                                                                       
Query: 294 cataaagccatcaacctgagttctcaaatatgagctgagcaaggaccacagtgggcatgc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cataaagccatcaacctgagttctcaaatatgagctgagcaaggaccacagtgggcatgc 838

                                                                       
Query: 354 caaagtaaacagagaaaagcccacaaagcctcaatactgtgggcaactcagaagaggtgg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 caaagtaaacagagaaaagcccacaaagcctcaatactgtgggcaactcagaagaggtgg 778

                                                                       
Query: 414 ttggtcttccccaggaaagatgctaatatttttaaaaagaagcctctttctgcaagagca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttggtcttccccaggaaagatgctaatatttttaaaaagaagcctctttctgcaagagca 718

                                                                       
Query: 474 tgaccatgatacatactcaataacataaaataattatatattaggcaaataatagtggtt 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgaccatgatacatactcaataacataaaataattatatattaggcaaataatagtggtt 658

                                   
Query: 534 tctcttcctgatttatctcctgca 557
           ||||||||||||||||||||||||
Sbjct: 657 tctcttcctgatttatctcctgca 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_p22.g1 MSMg01no436_p22.g1 CHROMAT_FILE:
MSMg01no436_p22.g1 PHD_FILE: MSMg01no436_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
         (434 letters)



>mm_chr10_63673297_63674130
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattccagttcccttcttctcccagggccactgatctttcactatggatgcatgctgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattccagttcccttcttctcccagggccactgatctttcactatggatgcatgctgttg 260

                                                                       
Query: 61  gcttttgaaaaccaacagctttgtgtatgacaatagggaaagctgaaatggcaaaatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttttgaaaaccaacagctttgtgtatgacaatagggaaagctgaaatggcaaaatctt 320

                                                                       
Query: 121 tatttttttattttttggttttgttttgttacaacacaggttttcattgttgttgttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttttattttttggttttgttttgttacaacacaggttttcattgttgttgttgtg 380

                                                                       
Query: 181 tgtgttttacccctctttagtgctcacaccccagactgctctagacctttggctaatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgttttacccctctttagtgctcacaccccagactgctctagacctttggctaatatc 440

                                                                       
Query: 241 cagagttcagagaaatctagttatgactcttttgctttcattcttctacttgtataaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagttcagagaaatctagttatgactcttttgctttcattcttctacttgtataaaga 500

                                                                       
Query: 301 agaaaatcttgagaatcatcactgtactgtttttgtaaaagttgttattttgtgttaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaatcttgagaatcatcactgtactgtttttgtaaaagttgttattttgtgttaata 560

                                                                       
Query: 361 tgttgaatatcaattagctgaaagtttgcatgtgtgcttcctggatatacacatgctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttgaatatcaattagctgaaagtttgcatgtgtgcttcctggatatacacatgctctt 620

                         
Query: 421 gtgttaattttcca 434
           ||||||||||||||
Sbjct: 621 gtgttaattttcca 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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