BAC Information

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BAC

Clone NameMSMg01-437I08
Chromosome10 (Build37)
Map Location 46,377,723 - 46,378,091
singlet/doubletsinglet
Overlap genenone
Upstream geneHace1, LOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437I08.T7 (MSMg01no437_i08.b1)MSMg01-437I08.TJ (MSMg01no437_i08.g1)
ACCAG528333AG528334
length770788
length of high quality
(start - end)
375 (50 - 424)43 (354 - 396)
definitionCHROMAT_FILE: MSMg01no437_i08.b1 PHD_FILE: MSMg01no437_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:56 2005CHROMAT_FILE: MSMg01no437_i08.g1 PHD_FILE: MSMg01no437_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGAT
CCGCGGAATTCTCATATTCATATGAAAAAGAAAAAATAGGCTAGCTAAAG
CAGTTCTGTAAAATTAAAAAAAAAAATTCTGGAGATATCACCATGGTCTC
AGGTATCACATCAGGCTTTCTTTTCAACCCTCAAATTTCAGTTATGACTC
TCTTAATTGAGCCCACATCATTCTACTTCTATTTCCCAACTACTTACTTG
CTCCTCATAATGCTCCCCAGAGCCTCTGAGTGTTGGAGGTTATCTTAGAA
GTGGTCTCAGGCATGGCATGCCTGCTCATTCATTATGGCATCAGACTGGT
GGTCATCTGAGACTAGCTCCATTTCTGGGTCCCATAACACCCATCTGATG
GTCATTGTGAGCATACTTCTCACCCGCGCCACCATAGCGACCCCTTGTAC
ATGTTGTGTGTCTCAGGTTCATTCCTGTCCAGTGTGTACTGTTTCATGTC
AGGTTCTCCTCGTCCTTGGATTGCTTCCTTGTCCAGTTCTTCTCCACGCT
CATTTGTAGTATCCTCATGCTGCTTCCCTGTCCAGTTTATCTCCCCCCTG
GTCTTGTTGCTCCTTTCACCTTGTCCTCTTTTTTCTATCCTTTCTCTCCT
CCTACCTATTTTGCTCCCCCTAACCCTTCTCCCTATTCCTTACTTTCTCT
GTCCAACCCTTTCGCCACCCTCCCTTCCTCCTTTTTTCTTTTCTATCTTT
CCATATCCTTTCTCTTCTTN
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGAAATTCTGTGACTGGGATTATCAGCCATGGG
CAGAACTTGTTTACCTCTCAGGTCGATTGCTAGGGACCCTTAACCTCGAT
TAAGTAACTTATAATTACTATGCCAGGTAAGTATCCCGAAGAAATCAATA
TTATACCCCAAGGAAATCCTAGGGATACCCATTATAATGGAACAACTCGA
AATATCACTATTTGCAGGCGATATGATAGTATAATAGTGACCCCCCACAT
TCCAACAAAGAACTCCTAGACCTATTATTTTACTTCAGTGAAGTACCTGC
ATATAAAATTAACTGACATATATGACTGGCCTTTCCCGACATGAAGAATA
AACAGGCTGAGAAAGATATTCCGCGAACAACACCCTTCTCAATAGTCACA
AATAACATAAAATACCTTGGTGTGATTCTAACTAAGGAAGTCGAAAGACT
GTATGATAAGAATTTCAAGTCTCGGACTCTGTAGACCTTACGAAATTACC
CTCGACCTCGTCCACAGGTTGTGCCCGTATAACTGGAACTTCTTCTTGGC
ACGTGTCCTAATCTTCTAATTCGCTTATTCCCTTCTCCTTGTTCTTCTCC
TTACTACTCCCGGCCACTCCTCCGTGATCTTTTCCCCCTGTTTTCCTCTC
TGTCGCTTGCTTTACCTTTTCCCCTTCATCCTTTTCTCAATCTCCCTGCT
TTCTTTCTTCTTCTTTTTCCTTACTCCTTCTCTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_i08.b1 MSMg01no437_i08.b1 CHROMAT_FILE:
MSMg01no437_i08.b1 PHD_FILE: MSMg01no437_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:56 2005
         (375 letters)



>mm_chr10_46377517_46378291
          Length = 775

 Score =  669 bits (346), Expect = 0.0
 Identities = 365/372 (98%), Gaps = 5/372 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctcatattcatatgaaaaagaaaaaa-taggctagctaaagcagttctgtaa-a 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct: 207 ggaattctcatattcatatgaaaaagaaaaaaataggctagctaaagcagttctg-aaca 265

                                                                       
Query: 64  attaaaaaaaaaaattctggagatatcaccatggtctcaggtatcacatcaggctttctt 123
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attaaaaaaaaa--ttctggagatatcaccatggtctcaggtatcacatcaggctttctt 323

                                                                       
Query: 124 ttcaaccctcaaatttcagttatgactctcttaattgagcccacatcattctacttctat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcaaccctcaaatttcagttatgactctcttaattgagcccacatcattctacttctat 383

                                                                       
Query: 184 ttcccaactacttacttgctcctcataatgctccccagagcctctgagtgttggaggtta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcccaactacttacttgctcctcataatgctccccagagcctctgagtgttggaggtta 443

                                                                       
Query: 244 tcttagaagtggtctcaggcatggcatgcctgctcattcattatggcatcagactggtgg 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttagaagtggtctcaggcatggtatgcctgctcattcattatggcatcagactggtgg 503

                                                                       
Query: 304 tcatctgagactagctccatttctgggtcccataacacccatctgatggtcattgtgagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcatctgagactagctccatttctgggtcccataacacccatctgatggtcattgtgagc 563

                       
Query: 364 atacttctcacc 375
           | ||||||||||
Sbjct: 564 acacttctcacc 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)