BAC Information

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BAC

Clone NameMSMg01-437K11
Chromosome10 (Build37)
Map Location 85,806,602 - 85,807,105
singlet/doubletsinglet
Overlap geneSyn3, Timp3
Upstream geneBtbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437K11.T7 (MSMg01no437_k11.b1)MSMg01-437K11.TJ (MSMg01no437_k11.g1)
ACCAG528435AG528436
length743748
length of high quality
(start - end)
346 (78 - 423)504 (76 - 579)
definitionCHROMAT_FILE: MSMg01no437_k11.b1 PHD_FILE: MSMg01no437_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:07 2005CHROMAT_FILE: MSMg01no437_k11.g1 PHD_FILE: MSMg01no437_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTTGTTTTGTCATAGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTATTTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTG
TTCTGTTCAGGAATCTTTCCTCTGTACTTTATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGCGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTATATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCTGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGATTATCATT
GACCTTAGGTGTGTGGCTTCATTTCTGGTTCTTCAACTCTATCCCATTGG
TCTATTTGTCTGTCTCCATACCAGTACCATTGTGTTTTTATCACAATTGC
CCTGTTTTTCATTTTTTACGTCCGGGATGGTGATTCCCCCAGAGTTTCTT
TTTCCTTTGAAATAAGATTTTGCTATTTTCCCGTCTTGTTATT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAGGGTTTTGTGCGTTGTCATTA
CTACAATGACAGCCTAAAGATCAGACTGTCATACAAGACAAACCTAATGG
ATTGACTGCCAAGAGCTGTTGAAGAGGCAACCTATTTCTAGCTAGGTTAA
AGCTGAGATACCATGAGATCAGGACACAACCAGATGCACAATGGAGCCAA
GGCTGCCAGGCAGGAGTGGGTAAGCAAGCCAGACCCTTAACCTGAGGAGC
CAGGTGTCTGCAACCCTCTGGATGTCTCTGACTCAAGCTTCGGCAGACCA
CCCCAGAGCAAAGGAGTCTCAGTGCTCCTGCAGACACTTACCTGTCAGCA
GGTACTGGTATTTGTTGACTTCTAGCTTGAGGCCACAAAGACTTTCAGAG
GCTTCCGTGTGAATGTACTGCACGTGGGGCATCTTACTGAAGCCTCGGTA
CATCTGTGGGCAAAAGAAACATGAGCGTGAGAGAGAGCCCAGTGTCCAAT
CTGCATGCTGCTGTGTAGTGTTCTGTAGAGTCTCTGGTCCCTCTGTGCAG
CCGGACAGTGCTAGGCTATGAACCTGTCACCACAGGTTTTCCTGAACACC
GAAGGAGGCCTTCTAGTCTTTTCCCTGCGCCAGAATTCTGTCTTTCCATC
CAGCTATATGTATGTTCTATCCACCTGCTGTATCCCTCTCCTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_k11.g1 MSMg01no437_k11.g1 CHROMAT_FILE:
MSMg01no437_k11.g1 PHD_FILE: MSMg01no437_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:07 2005
         (504 letters)



>mm_chr10_85806402_85807305
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/504 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagggttttgtgcgttgtcattactacaatgacagcctaaagatcagactgtcataca 60
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 704 cttagggttttgtgtgttgtcattactacaacgacagcctaaagatcagactgtcataca 645

                                                                       
Query: 61  agacaaacctaatggattgactgccaagagctgttgaagaggcaacctatttctagctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 644 agacaaacctaatggattgactgccaagagctgttgaagaggcaacctatttctagctac 585

                                                                       
Query: 121 gttaaagctgagataccatgagatcaggacacaaccagatgcacaatggagccaaggctg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 584 gttaaagctgagataccatgagatcaggacacaaccagatgtacaatggagccaaggctg 525

                                                                       
Query: 181 ccaggcaggagtgggtaagcaagccagacccttaacctgaggagccaggtgtctgcaacc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccaggcaggagtgcgtaagcaagccagacccttaacctgaggagccaggtgtctgcaacc 465

                                                                       
Query: 241 ctctggatgtctctgactcaagcttcggcagaccaccccagagcaaaggagtctcagtgc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctggatgtcactgactcaagcttcggcagaccaccccagagcaaaggagtctcagtgc 405

                                                                       
Query: 301 tcctgcagacacttacctgtcagcaggtactggtatttgttgacttctagcttgaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcctgcagacacttacctgtcagcaggtactggtatttgttgacttctagcttgaggcca 345

                                                                       
Query: 361 caaagactttcagaggcttccgtgtgaatgtactgcacgtggggcatcttactgaagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caaagactttcagaggcttccgtgtgaatgtactgcacgtggggcatcttactgaagcct 285

                                                                       
Query: 421 cggtacatctgtgggcaaaagaaacatgagcgtgagagagagcccagtgtccaatctgca 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 284 cggtacatctgtgggcaaaagaaacatgatcgtgagagagagcccagtgtccaatctgca 225

                                   
Query: 481 tgctgctgtgtagtgttctgtaga 504
           ||||||||||||||||||||||||
Sbjct: 224 tgctgctgtgtagtgttctgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)