Query= MSMg01no437_l24.b1 MSMg01no437_l24.b1 CHROMAT_FILE:
MSMg01no437_l24.b1 PHD_FILE: MSMg01no437_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:14 2005
(483 letters)
>mm_chr10_93779479_93780361
Length = 883
Score = 779 bits (403), Expect = 0.0
Identities = 463/485 (95%), Gaps = 6/485 (1%)
Strand = Plus / Plus
Query: 4 ggaattccagtcccttaacgg-aaagatgcgaagacaggatatttctcagaggctcagaa 62
|||||||||||||| || || |||||| |||||||||||||||||||| |||||||||
Sbjct: 204 ggaattccagtcccacaaaggaaaagatatgaagacaggatatttctcagtggctcagaa 263
Query: 63 ctttatcttgggaacccatctgcctgggttcaaatctagtgtgacagctcgcgctgacct 122
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 264 ctttatcttgggaacccatctgcctgggttcaaatcgagtgtgacagctctcgctgacct 323
Query: 123 gttaattcacaactaagggttttctgacttgcgtggtcagctatggtaaagactcaggg- 181
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgattcacaactaagggttttctgacttgcgtggtcagctatggtaaagactcagggt 383
Query: 182 ---ttttttgttttgttttttaaattagatattttatttatttacatttcgagtgttatc 238
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tttttttttgttttgttttttaaattagatattttatttatttacatttcaagtgttatc 443
Query: 239 ccctttttttggtctcccctctgcaaaccccctagcccattcccccttatcctgcttcta 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctttttttggtctctcctctgcaaaccccctagcccattcccccttatcctgcttcta 503
Query: 299 tgagggtgctcccctacccacctacccattcctgcttcaccgccctagcatccctctaca 358
|||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 504 tgagggtgctcccctaccta-ctacccactcctgcctcaccgccctagcatccctctaca 562
Query: 359 ctgaggcatcaagccttcacaggaccaagggccacccctcccattgatgccggataaggc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgaggcatcaagccttcacaggaccaagggccacccctcccattgatgccggataaggc 622
Query: 419 cccttcatctcctttagtccttctcctaagtcctccattggggtccctaatttcagtccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 cccttcatctcctttagtccttctcctaagtcctccattggggtccctaatctcagtcca 682
Query: 479 atggt 483
|||||
Sbjct: 683 atggt 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_l24.g1 MSMg01no437_l24.g1 CHROMAT_FILE:
MSMg01no437_l24.g1 PHD_FILE: MSMg01no437_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:14 2005
(460 letters)
>mm_chr10_93960216_93961075
Length = 860
Score = 768 bits (397), Expect = 0.0
Identities = 444/461 (96%), Gaps = 6/461 (1%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaactctgtctcaggggaaaaaaaaaatgaatgtgt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 457 caggacagccagggctatacagagaaactctgtctcagggg---gaaaaaatgaatgtgt 401
Query: 61 ggatgcatgtatgattgggtgtgagcaaataaaatcctggccacccaacctgattggtga 120
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 400 ggatgcatatatgattgggtgtgagcaaataaaatcctggccacccaacctaattggtga 341
Query: 121 tgggaattccatgagcttctggctctttcctctccaatgcaattatttaagtgacaatat 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgggaattccacaagcttctggctctttcctctccaatgcaattatttaagtgacaatat 281
Query: 181 gacatctacttttccgcctgccttacctgaaaaaaacaaacaaacaagcaaacaaacaaa 240
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 280 gacatctacttttccgcctgcctgacctg-aaaaaacaaacaaacaagcaaacaaacaaa 222
Query: 241 caaaatgtcctgagtacagtttacctcctactgtaatgcccatggagacccaaaaaggaa 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 221 caaaatgtcctgagtacagtttacctcccactgtaatgcccatggagacccaaaaaggaa 162
Query: 301 gaagaatcggctggtgatggattcaaagtcaagaccacctgacattagcaagcaaggctc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 161 gaagaatcggctggtgatggattcaaagtcaagaccatctgacattagcaagcaaggctc 102
Query: 361 tctactgggtaatgttccccaggcaaaaa-taggaatgcctacaaaaaaagtacagcatg 419
|||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 101 tctattgggtaatgtttcccaggcaaaaaataggaatgcctacaaaaaa-gtacagcatg 43
Query: 420 catgttaaaaacacatcaagcatactaagacagattctcag 460
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 42 catgttaaaaacacatcaagcatactaagacaggttctcag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
