BAC Information

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BAC

Clone NameMSMg01-437M21
Chromosome10 (Build37)
Map Location 87,777,397 - 87,940,537
singlet/doubletdoublet
Overlap gene1200002N14Rik, Gnptab, Sycp3, Chpt1
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Downstream gene8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M21.T7 (MSMg01no437_m21.b1)MSMg01-437M21.TJ (MSMg01no437_m21.g1)
ACCAG528550AG528551
length786788
length of high quality
(start - end)		427 (71 - 497)497 (71 - 567)
definitionCHROMAT_FILE: MSMg01no437_m21.b1 PHD_FILE: MSMg01no437_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:19 2005CHROMAT_FILE: MSMg01no437_m21.g1 PHD_FILE: MSMg01no437_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,940,115 - 87,940,537)(87,777,397 - 87,777,893)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAA
TTCTCCTTTTGATTCCTTTCAAGACAGGGTTTCTCTGTGCAGTCCTGACT
GTCCTGGAACTCACTCTGTACAGCAGGCTGGCCTCAAACTCAGAAATCCG
CTTGCCTCTGCCTCCCAAGTGCTGGGGTTAAAGGTGTGTGCTACCACTGC
CTGGCTTGACCTTCTGTCTCATTTACACCTGCTAGAAAGAAGTCTCGATT
TGACAGATTGCTTGAGTGATTAATCTCTTGAGTCTGGCCGATCACTATCC
TTGCCCTCTTCCAAGCTCCCATGATTTTTACCGTGGCCTTGTGGTGATTA
TGGCTTGTCCCAGAGTTGATTGCTTCTTCTACTTCACAAAGAGTATATTC
CAAAAAATCATGGTCTTGCCTTTACTAAAATTAAGATTAAAATGCCCAAG
AAATGAAAGTGAAAACACATTCTGGCAATTTGCTGGGGCTTTTCAACGTG
TGTGTGCGTGTGTGTGTGTGCGTGTGTGCTCCCCCCCTCATTCCCTTTTC
TTCCTCCCTTTCTCTTTCCCTTTCCCTCCCTCCTCTTCCCCCTTTTTTTT
CCCCCACCTCCCTCTCTCTTTTTTTTTTTCCTTTTCCCTCTCTCCCTTCC
TCCATCTGCCCCCCCCTCTTTTTCCTTATTTCTCTCCCCATCCCCCATCT
CCTTATTTCCCTACCCTTATCTCATCCTCTATTCCTCTTTCTTCTATACT
CCTCCGTCTATTATTTTCCCCCCTCTTTATCTTTCN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCCCAGAGATTTTATTACGGTGGAAAGCT
GCCATGTTGGCTCTCAAGACTGACTGAAGGAGGGGTGTCAAAAGCGTAAT
TCATCCTGGTTCCCATTTTATTCTCCTCCCTCCAGGTCACCAATGTGACT
GCTGCTGGTGGTGTTCCATGCCTTCTGAGTGTCTTCGAAATGAACTGGAC
CAGTTAACCACGGCCATTTACACAGTCCGTGTTAACTGCTTACCACATTA
AGGCCTGACTATTTGAGTTGGAATAATGTATACCCTGGTTTGATGGTTCT
GAGCCAAAACTCAGGGACACAAAAATGCCCTCCCTCATTTATAAGCCTCG
TGACCCAAGTCCATTACTAATCCCCATCCATCCTTGCCAGCACAGCACTT
TCCACTGCCCCTGCAATGTGTCAGCAACTAGGTAATGATTTAATAACATC
AGGAGACGGCCTTGTGCTTCCTCACTTGGCAGGTGACAAGGGATTTTCCT
GATTTCAATTTCAAGGTGGCTCTGACTTAAAGGTTCTGAGTGCAGTCAAA
TGGAATAAAAAATCCACCTGTTGTGGCCACTGAGGGAAAGTTAAAACAAT
ACTTGACTTTTTCTGTATTTAAAAAAACCCGAGACAACAACCTTGTTTCT
CCGCTACCCTTGGGGGCTGTGACTTAAAATTCTTCGTAGCCCCTTGTTCC
CAAGGGGTTGGCTATATTCTCTAACCATACAACTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m21.b1 MSMg01no437_m21.b1 CHROMAT_FILE:
MSMg01no437_m21.b1 PHD_FILE: MSMg01no437_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:19 2005
         (427 letters)



>mm_chr10_87939779_87940605
          Length = 827

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacagggtttctctgtgcagtcctgactgtcctggaactcactctgtacagcaggctg 60
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 759 aagacagagtttctctgtgcagtcctgactatcctggaactcactctgtacagcaggctg 700

                                                                       
Query: 61  gcctcaaactcagaaatccgcttgcctctgcctcccaagtgctggggttaaaggtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gcctcaaactcagaaatccgcttgcctctgcctcccaagtgctggggttaaaggtgtgtg 640

                                                                       
Query: 121 ctaccactgcctggcttgaccttctgtctcatttacacctgctagaaagaagtctcgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctaccactgcctggcttgaccttctgtctcatttacacctgctagaaagaagtctcgatt 580

                                                                       
Query: 181 tgacagattgcttgagtgattaatctcttgagtctggccgatcactatccttgccctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgacagattgcttgagtgattaatctcttgagtctggccgatcactatccttgccctctt 520

                                                                       
Query: 241 ccaagctcccatgatttttaccgtggccttgtggtgattatggcttgtcccagagttgat 300
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ccaagctcccatgatcatgaccgtggccttgtggtgattatggcttgtcccagagttgat 460

                                                                       
Query: 301 tgcttcttctacttcacaaagagtatattccaaaaaatcatggtcttgcctttactaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 459 tgcttcttctacttcacaaagagtatattccaaaaaatcatggtcttgtctttactaaaa 400

                                                                       
Query: 361 ttaagattaaaatgcccaagaaatgaaagtgaaaacacattctggcaatttgctggggct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 399 ttaagattaaaatgcccaagaaatgaaagtgaaaacacattctggtaatttgctggggct 340

              
Query: 421 ttt 423
           |||
Sbjct: 339 ttt 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_m21.g1 MSMg01no437_m21.g1 CHROMAT_FILE:
MSMg01no437_m21.g1 PHD_FILE: MSMg01no437_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:19 2005
         (497 letters)



>mm_chr10_87777197_87778093
          Length = 897

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccagagattttattacggtggaaagctgccatgttggctctcaagactgactgaagg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccagagattttattacgatggaaagctgccatgttggctctcaagactgactgaagg 260

                                                                       
Query: 61  aggggtgtcaaaagcgtaattcatcctggttcccattttattctcctccctccaggtcac 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggtgtcaaaagtgtaattcatcctggttcccattttattctcctccctccaggtcac 320

                                                                       
Query: 121 caatgtgactgctgctggtggtgttccatgccttctgagtgtcttcgaaatgaactggac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caatgtgactgctgctggtggtgttccatgccttctgagtgtcttctaaatgaactggac 380

                                                                       
Query: 181 cagttaaccacggccatttacacagtccgtgttaactgcttaccacattaaggcctgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttaaccacggccatttacacagtccgtgttaactgcttaccacattaaggcctgact 440

                                                                       
Query: 241 atttgagttggaataatgtataccctggtttgatggttctgagccaaaactcagggacac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atttgagttggaagaatgtataccctggtttgatggttctgagccaaaactcaggaacac 500

                                                                       
Query: 301 aaaaatgccctccctcatttataagcctcgtgacccaagtccattactaatccccatcca 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatgccctccctcatttataagccttgtgacccaagtccattactaatccccatcca 560

                                                                       
Query: 361 tccttgccagcacagcactttccactgcccctgcaatgtgtcagcaactaggtaatgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttgccagcacagcactttccactgcccctgcaatgtgtcagcaactaggtaatgatt 620

                                                                       
Query: 421 taataacatcaggagacggccttgtgcttcctcacttggcaggtgacaagggattttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taataacatcaggagacggccttgtgcttcctcacttggcaggtgacaagggattttcct 680

                            
Query: 481 gatttcaatttcaaggt 497
           |||||||||||||||||
Sbjct: 681 gatttcaatttcaaggt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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