BAC Information

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BAC

Clone NameMSMg01-437P06
Chromosome10 (Build37)
Map Location 42,633,013 - 42,808,765
singlet/doubletdoublet
Overlap geneScml4, C230040G06, Sobp
Upstream geneArmc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, EG666569
Downstream gene9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P06.T7 (MSMg01no437_p06.b1)MSMg01-437P06.TJ (MSMg01no437_p06.g1)
ACCAG528663AG528664
length798792
length of high quality
(start - end)
424 (49 - 472)334 (81 - 414)
definitionCHROMAT_FILE: MSMg01no437_p06.b1 PHD_FILE: MSMg01no437_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:31 2005CHROMAT_FILE: MSMg01no437_p06.g1 PHD_FILE: MSMg01no437_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,808,349 - 42,808,765)(42,633,013 - 42,633,346)
sequence
CTTCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTATATCTTCCTCTGAAGGCTGCTAGCAGGATATTGACTT
CCAGGTAGCTAGAATGGGGGTCTTAAAGCCCACACGCACAGTGACACACC
TACTCCAAAAAGGCCACACCTTCTAATAGTGCCACTACCTGGGCCAAGCG
TATACAAATCACCACAGCACCCTTGCCAATGCTGCCTGGCTTCTGCTTAG
TCGCAGCTAGTGGTTCTGTATAAATATAGTATGGTGCACATTATAGTTTA
TAAGGCCATCCAAGCACTTATGATTCAATGGCTCTACATAAATATAGTGT
AGTAGATATTACAGTTTATAAGGCCACCCAAAACATTCTTATGATTCAAA
GACATCACATAAGGCATGGAAAAGAATTGTGCTAGGACACTTGGTTACAT
GTAAATTCTACTTGATTTTGTTAGCAAGGGAAGACTCATATTGGTAAAGA
TTTTTATCAAGTAGCAATCCTTAGCCCTCTTTTACTAACTTCCAAATCCA
ATCATACCACGTCTTTCCGCTTCCCAATTACCTAAAAATCCCATCTACGA
GGCTTAAATCTCTGCGAGTTTAATGGCCCTTGCCACCATGGCCCTAATCT
CCTTCCAAATAAAAATAATGTCTGAACACCTTATCCCTCCGAACCCTCGG
TAACCATTTTATCTTGGCTTGTAACGTGCTCCAAATAACAACCCTAACTA
AATACACTGTACTTCAATTCGTCCTATTCTCGCCCCATACTATTTCTG
TTTCTCGATGATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTTTATCCTTCTCCTTC
TTTGCAATCCTTTCAAATGCAAAAACACAGTCGTGGGGAAAAGGTTGTTG
GTTATTCAAATTTACTTTAGTTTTCTTAACTTTTTTTTGGAGACGTCATT
TATTTTTATTTTATTGTATGAATGTTTGCTAGAATGTGTGTAGATATGTG
TGCAATGCCTGAGGAGACCAGAAGAGGGCGTGGGATCCCCTAGGAGAGAA
GTTACAGATGGTTGTGAACCATCACGATTGATCTTGGATCCTCTGCAAAA
GCAACCAGTGCTCTTAATGGCTCAACCATCTTCCCAGCCCCTTATTTAAT
TTCTCAAAAAGTGTGTGTGTGCGTGTGTGTGTGTCGTGCGCGCGTTTACC
TCCTCTCTTTATTCTTCCATTTCCCTTCCTCTCCCTTTCCCCTTTTTCCT
TCCCCTTTCTCCCTTTCTCTTTCTTTCTTCCTTTTCTCCTTCCCCCCTTC
TCTTTTTTTTCTTTCCCCTTTCTCTTTTTCCCCTCCTTATCCCTCATTTT
TCCATTCTTTATCCATCCTAATTCCCCCCCTTCTTTTCCCCTTCTCTTCT
CTTTTCTACTTTCTCTGTCCCTTCTTTTCTTTCTTCCTTCACTTTTGTCT
TCTTTATTATCTCTATCTCTAACGCCCTTTGTTTATCTTTTCTTTTTTCT
CCTTCCTTTTTTTCTTCCTCCCCTCTCTTTTATACTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p06.b1 MSMg01no437_p06.b1 CHROMAT_FILE:
MSMg01no437_p06.b1 PHD_FILE: MSMg01no437_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:31 2005
         (424 letters)



>mm_chr10_42807981_42808804
          Length = 824

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctatatcttcctctgaaggctgctagcaggatattgacttccaggtagctagaat 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattctatatcttcatctgaaggctgctagcaggatattgacttccaggtagctagaat 726

                                                                       
Query: 68  gggggtcttaaagcccacacgcacagtgacacacctactccaaaaaggccacaccttcta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gggggtcttaaagcccacacgcacagtgacacacctactccaaaaaggccacaccttcta 666

                                                                       
Query: 128 atagtgccactacctgggccaagcgtatacaaatcaccacagcacccttgccaatgctgc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atagtgccactacctgggccaagcgtatacaaatcaccacagcacccttgccaatgctgc 606

                                                                       
Query: 188 ctggcttctgcttagtcgcagctagtggttctgtataaatatagtatggtgcacattata 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctggcttctgcttagtcgcagctagtggttctgtataaatatagtatggtgcacattata 546

                                                                       
Query: 248 gtttataaggccatccaagcacttatgattcaatggctctacataaatatagtgtagtag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtttataaggccatccaagcacttatgattcaatggctctacataaatatagtgtagtag 486

                                                                       
Query: 308 atattacagtttataaggccacccaaaacattcttatgattcaaagacatcacataaggc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atattacagtttataaggccacccaaaacattcttatgattcaaagacatcacataaggc 426

                                                                    
Query: 368 atggaaaagaattgtgctaggacacttggttacatgtaaattctacttgattttgtt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atggaaaagaattgtgctaggacacttggttacatgtaaattctacttgattttgtt 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no437_p06.g1 MSMg01no437_p06.g1 CHROMAT_FILE:
MSMg01no437_p06.g1 PHD_FILE: MSMg01no437_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:31 2005
         (334 letters)



>mm_chr10_42632813_42633546
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctttatccttctccttctttgcaatcctttcaaatgcaaaaacacagtcgtggggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctttatccttctccttctttgcaatcctttcaaatgcaaaaacacagtcgtggggaa 260

                                                                       
Query: 61  aaggttgttggttattcaaatttactttagttttcttaacttttttttggagacgtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttgttggttattcaaatttactttagttttcttaacttttttttggagacgtcatt 320

                                                                       
Query: 121 tatttttattttattgtatgaatgtttgctagaatgtgtgtagatatgtgtgcaatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttattttattgtatgaatgtttgctagaatgtgtgtagatatgtgtgcaatgcct 380

                                                                       
Query: 181 gaggagaccagaagagggcgtgggatcccctaggagagaagttacagatggttgtgaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggagaccagaagagggcgtgggatcccctaggagagaagttacagatggttgtgaacc 440

                                                                       
Query: 241 atcacgattgatcttggatcctctgcaaaagcaaccagtgctcttaatggctcaaccatc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accacgattgatcttggatcctctgcaaaagcaaccagtgctcttaatggctcaaccatc 500

                                             
Query: 301 ttcccagccccttatttaatttctcaaaaagtgt 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccagccccttatttaatttctcaaaaagtgt 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)