BAC Information

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BAC

Clone NameMSMg01-438F13
Chromosome10 (Build37)
Map Location 95,944,477 - 96,122,600
singlet/doubletdoublet
Overlap geneBtg1
Upstream geneD10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491, LOC667380
Downstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438F13.T7 (MSMg01no438_f13.b1)MSMg01-438F13.TJ (MSMg01no438_f13.g1)
ACCAG528963AG528964
length772788
length of high quality
(start - end)		556 (31 - 586)335 (67 - 401)
definitionCHROMAT_FILE: MSMg01no438_f13.b1 PHD_FILE: MSMg01no438_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:05 2005CHROMAT_FILE: MSMg01no438_f13.g1 PHD_FILE: MSMg01no438_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,944,477 - 95,945,021)(96,122,267 - 96,122,600)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTA
TGCTAGGGAAGAGCCCCCTTGCCATGTACTACCAACAGTCTTTAGACAAT
CTGCCTCCAATAGAAGTAAAAGGTAAAGTTGCAAACGCCAGGGAATGCCA
CTTGTTTGTGAAGGAGAGAGAGGCAGTAGTAAGACAGAACCGACGAAACT
GCTAAAAACCCAATCTCCTGACTACTCTGAATTTCCAGGCTCCTGTAAAA
GGTTGTAGCAAAATGGGTCGAATTCTCCGGAAGTCACTTGGGAAAGGTGC
GATAACTCCAGAAGGAATGGAGAGAAAGGGGCAGGGCAGAGTTTAGGAAA
TGAGAGCTAAGATGTCTAGAGACCCTTTACATTGCATTTATCACTACATT
AAGCAAACATCGTTACCGCCATTTTACTGTCAACCAAGGCTAGGTTCAGG
TAGCCTATGGGAACTTTCTGACTTTTTTCTAGGAAGCTGTATGGCAGGAT
TTGAATGTTTTTCCTCTTTCCTAGGAAAACTGCATAGAAAGGTAGCCCGA
GGAAATGTCAGAAGGGCAGGTTGCACTATGGTCCAGATAACCTGTGACTT
CATGGGCAGTCTTAGCAAGAGCATTTACTAATGTTTCTTCTAAGCTACCA
CCCATCACACCCCCCCCCAACCCCCGTCCCAATGAAGCAACCTCTTAGGA
GTCTTTGTTTTAAGGAAGAGTGAGTATGTTTGTTCTTTTTCTTTCTTCTT
CTCTTTTTCTATCCACTTTTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGACATGAAGAAGAGAGGGTCTGGTTCCCAGG
ACACAATTTTCATTGCATACTCATAAATTGATGTGCAGGTTTTGAACGTG
ATTTCTAGATGCCTAGCCCAGAGACCTGACCCAGGGGCTGACCACAGAAG
GTATCTACACACTGGCAAGTGACACTTCAAATTTTTCAAAATTATGTTTA
CCCTGTGTCTCTTTGGACAGTCAAGCACCTCTCTTGTTAGCATGTCTTTC
TTTCCTAAACCTTGACATAANGATAGAGAGTATAATTGATTCTATTGCTT
CCCATCACCCAAGAACATAAGGTACACTAAGGAAACGGTGGGGTGGGGTG
TTTTTTCCCCCCCCCCCTTTTTTTTCCTCTTTTTCTTCTTTCCTCTCTCC
CTCTCTTTCCTGCCCTTTCCCTTTCTCCTCCTCTTTCTTTTTCCCCTCTC
TCTTTCTTCTCCTTCTTCCTCCTCTTCCTTTCTTCTTTTCCCATTCTTCT
TTTCCCTTCTCTTTTCCCTTTCCTCTTTTTTTCCTCCCCCCCTTTCTCTC
CTCCTCTCTATCTCCTTTTCCTTTTGTCCTCTCCTCCCCTCACTTTTTTC
TTTTTTTTTTTTTTCTTTATTCCCCTCTTTATTGTCATTTCCTTTTCCCT
TTTTCTTCCCCTTCTTCCCTATCCTCTTTCCCTTCATTATTATGCTCTGC
TCTCCACTCTTTATCTTTTTTCTCCATCCTCTCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_f13.b1 MSMg01no438_f13.b1 CHROMAT_FILE:
MSMg01no438_f13.b1 PHD_FILE: MSMg01no438_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:05 2005
         (556 letters)



>mm_chr10_95944266_95945221
          Length = 956

 Score =  992 bits (513), Expect = 0.0
 Identities = 537/545 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggaattctatgctagggaagagcccccttgccatgtactaccaacagtctttagacaatc 71
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 212 ggaattctatgctagggaagagcccccttgccatgtgctaccaacagtctttagacaatc 271

                                                                       
Query: 72  tgcctccaatagaagtaaaaggtaaagttgcaaacgccagggaatgccacttgtttgtga 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgcctccaatagaagtaaaaggtaaagttgcaaacgccagggaatgccacttgtttgtga 331

                                                                       
Query: 132 aggagagagaggcagtagtaagacagaaccgacgaaactgctaaaaacccaatctcctga 191
           ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||
Sbjct: 332 aggagagagaggcagtagtaagaaagaactgatgaaactgctcaaaacccaatctcctga 391

                                                                       
Query: 192 ctactctgaatttccaggctcctgtaaaaggttgtagcaaaatgggtcgaattctccgga 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 392 ctactctgaatttccaggctcctgtaaaaggttgtagcaaaatgggtcgaattctccaga 451

                                                                       
Query: 252 agtcacttgggaaaggtgcgataactccagaaggaatggagagaaaggggcagggcagag 311
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 452 agtcacttgggaaaggtgcgataactccagaaggaatggagagaaaggggtagggcagag 511

                                                                       
Query: 312 tttaggaaatgagagctaagatgtctagagaccctttacattgcatttatcactacatta 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 512 tttaggaaatgagagctaagatgtctagagaccctttacattgcatttatcaccacatta 571

                                                                       
Query: 372 agcaaacatcgttaccgccattttactgtcaaccaaggctaggttcaggtagcctatggg 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agcaaacatcgttaccgccattttactgtcaaccaaggctaggttcaggtagcctatggg 631

                                                                       
Query: 432 aactttctgacttttttctaggaagctgtatggcaggatttgaatgtttttcctctttcc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aactttctgacttttttctaggaagctgtatggcaggatttgaatgtttttcctctttcc 691

                                                                       
Query: 492 taggaaaactgcatagaaaggtagcccgaggaaatgtcagaagggcaggttgcactatgg 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 taggaaaactgcatagaaaggtagcccgaggaaatgtcagaagggcaggttgcactatgg 751

                
Query: 552 tccag 556
           |||||
Sbjct: 752 tccag 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_f13.g1 MSMg01no438_f13.g1 CHROMAT_FILE:
MSMg01no438_f13.g1 PHD_FILE: MSMg01no438_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:06 2005
         (335 letters)



>mm_chr10_96122067_96122801
          Length = 735

 Score =  609 bits (315), Expect = e-179
 Identities = 329/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgacatgaagaagagagggtctggttcccaggacacaattttcattgcatactcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctgacatgaagaagagagggtctggttcccaggacacaattttcattgcatactcataa 475

                                                                       
Query: 61  attgatgtgcaggttttgaacgtgatttctagatgcctagcccagagacctgacccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 attgatgtgcaggttttgaacgtgatttctagatgcctagcccagagacctgacccaggg 415

                                                                       
Query: 121 gctgaccacagaaggtatctacacactggcaagtgacacttcaaatttttcaaaattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctgaccacagaaggtatctacacactggcaagtgacacttcaaatttttcaaaattatg 355

                                                                       
Query: 181 tttaccctgtgtctctttggacagtcaagcacctctcttgttagcatgtctttctttcct 240
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 354 ggtaccctgtgtctctttggacagtcaagcacctctcttgttagcgtgtctttctttcct 295

                                                                       
Query: 241 aaaccttgacataangatagagagtataattgattctattgcttcccatcacccaagaac 300
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaaccttgacaaaatgatagagagtataattgattctattgcttcccatcacccaagaac 235

                                             
Query: 301 ataaggtacactaaggaaacggtggggtggggtg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ataaggtacactaaggaaacggtggggtggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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