BAC Information

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BAC

Clone NameMSMg01-439H14
Chromosome10 (Build37)
Map Location 23,676,810 - 23,677,053
singlet/doubletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3
Downstream geneTaar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439H14.T7 (MSMg01no439_h14.b1)MSMg01-439H14.TJ (MSMg01no439_h14.g1)
ACCAG529819AG529820
length773794
length of high quality
(start - end)
244 (67 - 310)159 (71 - 229)
definitionCHROMAT_FILE: MSMg01no439_h14.b1 PHD_FILE: MSMg01no439_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:36 2005CHROMAT_FILE: MSMg01no439_h14.g1 PHD_FILE: MSMg01no439_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAAATCCGCGGAATTC
CATTTTTTCCCCTGTCTCATTCCATCTTTCTCTGCTCCTTTTTTCCCCTA
CTTCACACTTTTCTACCTTTCACCTAGTGCAAGACAAATCTGAGTTGTCT
CTGAGGTCACAGCCATAGGACCACAAAGTTAGTTTGCTCTCTGGAGTCCA
GTCTCTGGTGGATTCCCATCTTCTCAACTGGCAGCATAGCGGAGGTGATG
ACAGAGTCTCCTGCAAACTGCAGGACACAGCAAATGCAGCCTCAAGAGGT
GTGGTTTGTGCTTTTGTACAGAAGACAGAGCAGCCTGCCCGGAGCCTCCC
TCAGCAGTATGGACCCATGTCCTACATGCCTACCACAGGGGGAGGAGTGA
GCGGGAGTAGAGGACAGGAGGACACAAGTGTCCCTTGCCTGGTAAGAAAC
TGACACACTATTTACCCTTGGTTCAGTAACTGTTGCTCTAAATTACGTAC
TAGGAAGCCTAATCCTAGTAAAATAAGGGAGATCGCATTATGATAGGCAA
ATAAATTCTTATTGCCTTCCCGTTCCAGTTGTTCTTGTTATTGTTCTTAC
CATGGGGAAACATACCTAATAAAATCTGGCGTGCCAAAACTAAACATTTC
ACCCCTCCCCCCCACCCTTTCTGGTTTTTCCTCCCCCTTTTTTTTTCTCC
CCGCCCCACCTCCTTTTTATTTTCACCCACTCCTTGTTTTTATTTCTATA
ATCCACCCCTCACCCTTCTTTCA
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATCTTTAACACATAAACCTTAGGAGACAC
AGCAAACATAGCTACCTGGTTTTTTGTTTTTGTTTTTTGTTTTGTTTTGT
TTTGTTGTCATTACTTTTTAAACAGTTTCTACGGGCCTCTTCTTCTTGTC
TCATTGTCTATTCCCTGTCTGCTTCAGTAGCAATGAAAGTGTTCAATTCA
GTTCTGCTCCATTTTCTTACCACCATATCAGCTACTCACGCACTGGAAGC
CTGACCCCTATTTTCTTTACTCCATGACGCTGACTGCTATAAACCCCAAA
GTATTCCACTTCATCCACGCAAATGCCCATTACCGACATCCTCTATTTCC
CTTTACCATCCTATACCCCCCTTTCATTCCCCTCCCTTATCCTTCCCCCC
ACCCCTCCCATTACCCCTCTCATTCCTTTTACCCCCCCCTCTCCACTTGC
TTTCTATTACCACCTTCCTACTCACAACTTTCTCCCCCGTCCCCTAATCC
ACACTCCCCCCCCCCTTTCTTTTTTCTCTTTTTACCTCTCCTTTTACCTT
TTTCCCCCTCTCTTTCTCCCCCCCCCTTTTTCCCCACCCCTCTCACTCTC
CACTCACCACTTTTTCCACTTAAACCTTTTTAATACACACCTCAAACATC
CCAATCCCCCCAATTATCCATCTTTTTCATTTCACCCCCCCCCCCCCTCT
TCTTCTCCCACTTCCTTTCTTTATTTATTCCCCCTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_h14.b1 MSMg01no439_h14.b1 CHROMAT_FILE:
MSMg01no439_h14.b1 PHD_FILE: MSMg01no439_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:36 2005
         (244 letters)



>mm_chr10_23676610_23677253
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattccatctttctctgctccttttttcccctacttcacacttttctacctttcaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcattccatctttctctgctccttttttcccctacttcacactttcctacctttcaccta 260

                                                                       
Query: 61  gtgcaagacaaatctgagttgtctctgaggtcacagccataggaccacaaagttagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaagacaaatctgagttgtctctgaggtcacagccataggaccacaaagttagtttg 320

                                                                       
Query: 121 ctctctggagtccagtctctggtggattcccatcttctcaactggcagcatagcggaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctggagtccagtctctggtggattcccatcttctcaactggcagcatagcggaggt 380

                                                                       
Query: 181 gatgacagagtctcctgcaaactgcaggacacagcaaatgcagcctcaagaggtgtggtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gatgacagagtctcctgcaaactgcaggacacagcaaatgcagcctcaagaggtgtcgtt 440

               
Query: 241 tgtg 244
           ||||
Sbjct: 441 tgtg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)