Query= MSMg01no439_k04.b1 MSMg01no439_k04.b1 CHROMAT_FILE:
MSMg01no439_k04.b1 PHD_FILE: MSMg01no439_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:49 2005
(551 letters)
>mm_chr10_49542414_49543362
Length = 949
Score = 946 bits (489), Expect = 0.0
Identities = 533/549 (97%), Gaps = 6/549 (1%)
Strand = Plus / Minus
Query: 5 gaattcttggatatcacgaaccaagcaaggaagtaaatagtgggacagctttacttagag 64
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattcttggagaaaaggaaccaagcaaggaagtaaatagtgggacagctttacttagag 690
Query: 65 ttaaaagatggaattttacttat-attgtaattagcaaacttagtgacactccttt-aaa 122
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 689 ttaaaagatggaattttactt-tcattgtaattagcaaacttagtgacactcctttaaaa 631
Query: 123 aaaaattcacacggtagcttctaaatgactgcagttattcagcctcttaagagcatatga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaaattcacacggtagcttctaaatgactgcagttattcagcctcttaagagcatatga 571
Query: 183 agtctaattgatgcactgtgatattaactttaaacatgctttcataaaaggtcaaatttg 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 570 agtctaattgatgcactgtgatattaactttaaacatgcttttataaaaggtcaaatttg 511
Query: 243 catttaatggaaccgtaacactgacagttgtcaaagatatgaaggagtgaacactttcat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 catttaatggaaccgtaacactgacagttgtcaaagatatgaaggagtgaacactttcat 451
Query: 303 acaatctctaagaaaaagaagtgctctaaaagggttgcattgttgaatctcagtcacagt 362
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 450 acaatctctaagaaaaagaagtgctctaaaagggttgcatcgatgaatctcagtcacagt 391
Query: 363 ttgctagcatgtggttccttaaggttcctgtggctattttacagccctgtgttgtcattt 422
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 390 ttgctagcatgtggttccttaaggttcctgtggctgttttacagccctgtgctgtcattt 331
Query: 423 acagttattcaagagtatactcagtagttcatctttatatacactttatttttacctagt 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 330 acagttattcaagagtatactcaatagttcatctttatatacactttatttttacctagt 271
Query: 483 tagaatagtttaataaatatagcagcagtttttcttttatcagatttgacagtgcaaaca 542
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 tagaatagtttaataaatat---agcagtttttcttttatcagatttgacagtgcaaaca 214
Query: 543 ggagctggt 551
|||||||||
Sbjct: 213 ggagctggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 949
Length adjustment: 10
Effective length of query: 541
Effective length of database: 939
Effective search space: 507999
Effective search space used: 507999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_k04.g1 MSMg01no439_k04.g1 CHROMAT_FILE:
MSMg01no439_k04.g1 PHD_FILE: MSMg01no439_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:49 2005
(479 letters)
>mm_chr10_49378850_49379728
Length = 879
Score = 785 bits (406), Expect = 0.0
Identities = 452/484 (93%), Gaps = 29/484 (5%)
Strand = Plus / Plus
Query: 1 catctgaagagacaaa-tgaattggggtttctcaatctaggtagttaaataataatttaa 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catctgaagagacaaaatgaattggggtttctcaatctaggtagttaaataataatttaa 259
Query: 60 tatttatttcatctagaacttcataatcacattttataaaatcctgttatcaacatagat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatttatttcatctagaacttcataatcacattttataaaatcctgttatcaacatagat 319
Query: 120 attaatacctgatggtaaaaggtgtacatagaaaattaagcaaggaacctggtaggtgat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attaatacctgatggtaaaaggtgtacatagaaaattaagcaaggaacctggtaggtgat 379
Query: 180 tccctgcctctagtcatgaggtcatgtctgacatccttaagaatatggaatggggaaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctgcctctagtcatgaggtcatgtctgacatccttaagaatatggaatggggaaaaa 439
Query: 240 catg----ttttttttctagcttgatacattacacacacatacacacacacacacacaca 295
|||| || | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 catggcacttct----ctagcttgatacataacacacacatacacacacacacacacaca 495
Query: 296 cacacacacacacacacacacacacacacgtgatgtctctcatacagtaaagtaagacca 355
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 496 cacacacac--------------------gtgatgtctctcatacagtaaagtaagacca 535
Query: 356 gcttatatgttctaagaaccagagagatgtccataagaagcttttcttccatgtgtacta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcttatatgttctaagaaccagagagatgtccataagaagcttttcttccatgtgtacta 595
Query: 416 cctattcagtctttgttgcgtactataactttcatgctagccagcttgctacaatggttc 475
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 596 cctattcagtctttgttgcgtactagaactttcatgctagccagcttgctacaatggttc 655
Query: 476 tgtt 479
||||
Sbjct: 656 tgtt 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
