BAC Information

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BAC

Clone NameMSMg01-439L08
Chromosome10 (Build37)
Map Location 38,296,354 - 38,296,527
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439L08.T7 (MSMg01no439_l08.b1)MSMg01-439L08.TJ (MSMg01no439_l08.g1)
ACCAG529998AG529999
length766809
length of high quality
(start - end)
174 (78 - 251)109 (73 - 181)
definitionCHROMAT_FILE: MSMg01no439_l08.b1 PHD_FILE: MSMg01no439_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:54 2005CHROMAT_FILE: MSMg01no439_l08.g1 PHD_FILE: MSMg01no439_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCACATCCGCG
GAATTCCAATGTATTTCGNACTGTAGTAGAAATATTCCACAACAATTCAG
TTTGATGCCTTCTGAAATTTTTCTCATTTTTTAAGTTTAGAGACAATCAG
TAATATTTGAACATCACACAGAGGTGAAGTTTGTGATCACAAAGGAGGCG
TTTAAACGCCAGTGGTTGCCCTTTTCAATTCATCCCTGCACTGCCTCACA
AATTTTAGATCCTTATTGATTTTTAAATTGACCCCTATCCCATAGCTGCA
ACATTGTTACCCAAGAGTATCNCTAATTCTTGCATTTATTAGTCCCATTT
TTGTAACAATATTTTAGTGCTTTGACCACTTTGCCAAATTATTACTCTTC
TTCAAATTGTTCTCTGTGCCCCCGCAACTTCCCTTATTCCTTATGACCTG
TTATAACAGAACTATAACCACTCTGACCCCAGAGAAAAACAGAGTTTTAT
TTCTTTCCCACTATTTTCTTTAATTCATAAGTGGCCCTTATATCTGACAA
TTTATGTTTACCCGCTCCCTTCCCCCTCTTAAATTCCGCTTGCATCCTTA
AGGACACTCTCTCATACTCTCTGTATTACCGTTACTTTTTATAGGCCCCC
CTCCTCACCCCTGTTTTTTTTTTTCACCCCTTCTTTTCTTTCTCCCCCCC
CCCCCCCTTTTTTTTTTCTACCCACCTCTTGTTTTATTCTCTTCTCTCTC
CCAACTCTTCTTTTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTCTTTA
ATGGGGTTATTTGATTTTCTAGAGCCCCCCTTCTTGAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCTGATTTATGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGTTCTTTTTGTCTTGTTGACTATGTCTTTTGCCTTGTTT
TTTCTTTGTTACCACTCGATGTCTTATCTATCGATTCTCTATTGTACTGC
ACAAGCCATTGCTCTTTTTTTTTGGAACTCTTTTCCTGTACCCATTTTTT
TCGATTCTTCTCCCCACTCTTTCTTTTCGTCTGTCTCTTTGTTCCCTTCC
TTTATTGTTTCCCTCTTTTTTTCCCTTTCCTTTTCCCTTCCTCCCTTCCC
TCTCTTTTTTCCCTCTTTTTCTTTTTTACCCTCCCCTTATTGTTTTTTCA
CTTTTTCTTCTTCCCTTCTCACCTTCTTTTTTTCTTTCTTCCCTCTTTCC
CCTCTCCCCCCCCCCCTTACTTTTTTTTCTCTTTTTTTTCCTTCTCCTTT
TCCCCTTTCTTCCCCCCTTTCTTTTCCCCCTCCCCTTCTTCCTCTTCCAC
TTCTTTTTCCTCTTTCTTCCTTTTTCCCCTATAACACCTTATTTATAAAT
CATACCTTTATTTCCATCGTCCTTTTTTTATTTTCTTTGTTTTTTTTCCC
CTCCCCTCTCCCTTTTTTCTCCCCCTTCTTGCTTTTTTTTCTTCCCTCCT
TCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_l08.b1 MSMg01no439_l08.b1 CHROMAT_FILE:
MSMg01no439_l08.b1 PHD_FILE: MSMg01no439_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:54 2005
         (174 letters)



>mm_chr10_38296154_38296727
          Length = 574

 Score =  313 bits (162), Expect = 3e-90
 Identities = 171/174 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatattccacaacaattcagtttgatgccttctgaaatttttctcattttttaagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agaaatattccacaacaattcagtttgatgccttctgaaatttttctcatttttcaagtt 260

                                                                       
Query: 61  tagagacaatcagtaatatttgaacatcacacagaggtgaagtttgtgatcacaaaggag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tagagacaatcagtaatatttgaacatcacacagaagtgaagtttgtgatcacaaaggag 320

                                                                 
Query: 121 gcgtttaaacgccagtggttgcccttttcaattcatccctgcactgcctcacaa 174
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgtttaaactccagtggttgcccttttcaattcatccctgcactgcctcacaa 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)