BAC Information

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BAC

Clone NameMSMg01-439M15
Chromosome10 (Build37)
Map Location 79,729,286 - 79,899,857
singlet/doubletdoublet
Overlap geneDazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a
Upstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt
Downstream geneOnecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439M15.T7 (MSMg01no439_m15.b1)MSMg01-439M15.TJ (MSMg01no439_m15.g1)
ACCAG530058AG530059
length763739
length of high quality
(start - end)		245 (65 - 309)436 (69 - 504)
definitionCHROMAT_FILE: MSMg01no439_m15.b1 PHD_FILE: MSMg01no439_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:01 2005CHROMAT_FILE: MSMg01no439_m15.g1 PHD_FILE: MSMg01no439_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,729,286 - 79,729,530)(79,899,422 - 79,899,857)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGCATGCGCGGAATT
CAAGAGTGACCATTAGCTCTGTGGGAGACCATAAGCCATAATTGTGGTTA
AGGAAATAGGGTAGGGAGACCATACGGGGTAGTTCAGAAGGCTAGGGGGA
CCTCCAACAGGAGTTACAGAGTCGAGAAGAGCCCAGTGGAGATTTGGGGG
AACCCCAAAGGATAGTTAAGGAGCTAGAGAGGCCTGAAAGGCTATTTCAG
GGGGCTGGGAGAATACCAGGAGGAGGCGCAGGACTCAGGAATACTCTAAA
AGATAATTGTTGACCCTGAGCCAGTGAGGCCTAGAAGGTGCAGGGTCCAA
GAGAACTCATTTGTTTGTGTTTGGTTTATTTTTTTATTTTTTATTTTTTT
GAGATTTTTTTAACAATTATTTTGGTTGTTGCTTGCTCATAAGGCAATTG
AGAGGCTGGGGAGACTCAGCTCCGGGGGTCTTAGAGGATTCTTGAGATTG
TTCCATGAGCTTGGAAGACCCCTCTGCTCTTTCTAGAATAACGCCTTTGT
TCTTCCCCTCTGGTTTCCTTTGGCTCCCTTCCTGCCTCCGAGGGTGATTC
TCTTGGTCTGCTCATTCCCCCCATTACGGAATCCTCCGCTTTTTTCTTCC
CCCCCCCCCCTGCATTTTTCCCCGCTTTCTTCCTCTTGCCTCCTCCGATC
CTCCTTCGCCCCCTTTTCTCTTTTTTCCCTGTCCACCCTGTCGGGGGCTC
GGCCTTTTATTCT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACGCCAGTCTGTGCTACATGAGATTCTTTAT
AAAACAAAAGGAAAAAAAAGGAGAGAAAACCCAAAAAACTCTGAGATTTG
ACTTGGTGCAAGGCTTGTCCTATGTTGGGGATCGGCTTTAATAATGGCTA
CTCCGCGTGTTCATCCACCTTTCTCCCAGCCCTCTTAGCCAAGGACACAA
ATCCCAAGCTCGAAATCCCTGCTCCCCATTTCCTCTTCGTCCAGAGCCTC
AAGGCAACCAATTCACACAGGGTCTCCTGCTCCCACCTAGCACTGAAGGC
AGCTCCGACTACCCCACGGTGAGCTTTCTGCCATTTGTTAAATCCACTTC
GTTCCTCACCTGCTCTTGGCTCACGAGACCCCCCCATCCCACCCCCACCG
CGGGACAAGTCCAAGGTGGAAAAGCCCAATGCCAAACCATCTTTCACCGC
CTACACTAAGAGATGGGGCTGATATCCTCATAACGAACTGCTGGAGTTTG
TCGTGACCTAAGACCTTTGTACTTCACTGTGTCTGTTGCTCAAAATCTAC
CTTCGCCGATGTATTCCACGTCTCAGCCCAATAAACCCTTCACCCTCTCA
CTATAGATTCCTGCCGGTTCTCTTCTCCCTGACAACCCTTTCTTCCCCTT
TTCTGAGTTACTCTCATTGAGTTTCTCCCCCTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_m15.b1 MSMg01no439_m15.b1 CHROMAT_FILE:
MSMg01no439_m15.b1 PHD_FILE: MSMg01no439_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:01 2005
         (245 letters)



>mm_chr10_79729086_79729730
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctctgtgggagaccataagccataattgtggttaaggaaatagggtagggagaccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctgtgggagaccataagccataattgtggttaaggaaatagggtagggagaccata 260

                                                                       
Query: 61  cggggtagttcagaaggctagggggacctccaacaggagttacagagtcgagaagagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggggtagttcagaaggctagggggacctccaacaggagttacagagtcgagaagagccc 320

                                                                       
Query: 121 agtggagatttgggggaaccccaaaggatagttaaggagctagagaggcctgaaaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggagatttgggggaaccccaaaggatagttaaggagctagagaggcctgaaaggcta 380

                                                                       
Query: 181 tttcagggggctgggagaataccaggaggaggcgcaggactcaggaatactctaaaagat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagggggctgggagaataccaggaggaggcgcaggactcaggaatactctaaaagat 440

                
Query: 241 aattg 245
           |||||
Sbjct: 441 aattg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no439_m15.g1 MSMg01no439_m15.g1 CHROMAT_FILE:
MSMg01no439_m15.g1 PHD_FILE: MSMg01no439_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:01 2005
         (436 letters)



>mm_chr10_79899222_79900057
          Length = 836

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgccagtctgtgctacatgagattctttataaaacaaaaggaaaaaaaaggagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aacgccagtctgtgctacatgagattctttataaaacaaaaggaaaaaaaaggagagaaa 577

                                                                       
Query: 61  acccaaaaaactctgagatttgacttggtgcaaggcttgtcctatgttggggatcggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acccaaaaaactctgagatttgacttggtgcaaggcttgtcctatgttggggatcggctt 517

                                                                       
Query: 121 taataatggctactccgcgtgttcatccacctttctcccagccctcttagccaaggacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taataatggctactccgcgtgttcatccacctttctcccagccctcttagccaaggacac 457

                                                                       
Query: 181 aaatcccaagctcgaaatccctgctccccatttcctcttcgtccagagcctcaaggcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaatcccaagctcgaaatccctgctccccatttcctcttcgtccagagcctcaaggcaac 397

                                                                       
Query: 241 caattcacacagggtctcctgctcccacctagcactgaaggcagctccgactaccccacg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caactcacacagggtctcctgctcccacctagcactgaaggcagctccgactaccccacg 337

                                                                       
Query: 301 gtgagctttctgccatttgttaaatccacttcgttcctcacctgctcttggctcacgaga 360
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atgagctttcagccatttgttaaatccacttcgttcctcacctgctcttggctcacgaga 277

                                                                       
Query: 361 cccccccatcccacccccaccgcgggacaagtccaaggtggaaaagcccaatgccaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cccccccatcccacccccaccgcgggacaagtccaaggtggaaaagcccaatgccaaacc 217

                           
Query: 421 atctttcaccgcctac 436
           ||||||||||||||||
Sbjct: 216 atctttcaccgcctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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