BAC Information

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BAC

Clone NameMSMg01-439P23
Chromosome10 (Build37)
Map Location 100,288,437 - 100,460,831
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P23.T7 (MSMg01no439_p23.b1)MSMg01-439P23.TJ (MSMg01no439_p23.g1)
ACCAG530218AG530219
length752733
length of high quality
(start - end)		455 (46 - 500)479 (74 - 552)
definitionCHROMAT_FILE: MSMg01no439_p23.b1 PHD_FILE: MSMg01no439_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:15 2005CHROMAT_FILE: MSMg01no439_p23.g1 PHD_FILE: MSMg01no439_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,460,381 - 100,460,831)(100,288,437 - 100,288,915)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTGCATAGCGCTATGAATTCATTGGTAATGAAGGTAGGATCTC
TGTTTACAGGCAGGAACAATTTTTGGAGAGCAGGCATCATACCTGAGGAC
TGTTAACACTGCATCTAATTACCATTATCCAACACTGTACCTGATAACTA
TTATCTAACACTGCATATGATGACCAGGATTTAATTGTTTATATGATGAC
TATTATCTAATATGGTATATGATGGCCATTATCTAACACTGTATATGATG
ACCATTATCTCACACTTTATATAATGAATATTACCTAACACTGTATATGA
TGACCACTACCTAACACTGACTCTGATAATCATTATCTAACCTTCGTTCT
AATATCATTATCTGCCACAATATCTATGGATATAATTTAACACTACATAT
GATGACCATTATCTAATACTAACGTACCTGTGATGATCATTATCTAACAC
TGTATCTGATGATCATTATCTTCTGAGAGTTACCATTCTTTAAATTGTAA
CTCCCCATGGAAGCCACCCCTTTTTCTTAATTGATTGTAACCCGGAACCT
AAAAAAAAGAATGGGGAAAAAAATAAAACCCACGTTTCCTAAAAAATTCT
TTAACCTCCGTTTATAAATCCCCGGCCCCAAAAACGAAATATGGCCCCCC
CAACTAAAAGCCCAAAAATTCACACACCCCCTTTTCTTGGGCGCCAATTG
CN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATTCACACAATAGCAAGAAACTGC
GAGCTTTACTTCCAGAGAATTGAGGCACTCAAGTGCTGAAATATTACAAC
TTAAAGATCTTTCTTCATGCCTCAAAACTTTCATAGTTACTTTATTATTT
ACACATTTTTTGATCTAATTTTTCTTTCCCCATATCTTTTAATTTCAAAA
ATATTTTGATTAATTTTCTTTTTATTTCATGTATGGTTGTTTTGCCTGAC
TGTCTGTGTACCACATACATTCGGTGCTCACGGAAGCCATTGATTTCTAT
GGAACAGAAGGTACAGATGATTGTGAGCCACCACATGAGTGCTGGGAGTT
GAACCCCAGTAACTCCAGAAAAGCAGCCATGGTTTTAATCACTGATGTAT
CTCTGAAGCTTCAGTGATGTAATTATTCCCACTCTTTGCTCTTGTTTTAT
GCTTTTTCATGGCGCTCAGGACTCAAGGAGTTTATGATGATGTAGTTCAG
GCCAGAAATTAATATACTTTCCTGACATCTCTTCTTAAACTTCACAAGAA
GGACTTTTCTATATTTTGTGTGNGNGTGTGTGTCCTTTTNTTTCCCTTCC
TCTTCNACTCTCCTTTTCCTTCTTCCCCCCCTTTTCTTCCTTTTTTCTCC
TCCTTTTTTTCTCTCCTTTTTCCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p23.b1 MSMg01no439_p23.b1 CHROMAT_FILE:
MSMg01no439_p23.b1 PHD_FILE: MSMg01no439_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:15 2005
         (455 letters)



>mm_chr10_100460177_100461031
          Length = 855

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgcatagcgctatgaattcattggtaatgaaggtaggatctctgtttacag 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaattcctctgcagagtgctatgaattcattggtaatgaaggtaggatctctgtttacag 596

                                                                       
Query: 65  gcaggaacaatttttggagagcaggcatcatacctgaggactgttaacactgcatctaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcaggaacaatttttggagagcaggcatcatacctgaggactgttaacactgcatctaat 536

                                                                       
Query: 125 taccattatccaacactgtacctgataactattatctaacactgcatatgatgaccagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taccattatccaacactgtacctgataactattatctaacactgcatatgatgaccagga 476

                                                                       
Query: 185 tttaattgtttatatgatgactattatctaatatggtatatgatggccattatctaacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttaattgtttatatgatgactattatctaatatggtatatgatggccattatctaacac 416

                                                                       
Query: 245 tgtatatgatgaccattatctcacactttatataatgaatattacctaacactgtatatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgtatatgatgaccattatctcacactttatataatgaatattacctaacactgtatatg 356

                                                                       
Query: 305 atgaccactacctaacactgactctgataatcattatctaaccttcgttctaatatcatt 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgaccactacctaacactgaatctgataatcattatctaaccttcgttctaatatcatt 296

                                                                       
Query: 365 atctgccacaatatctatggatataatttaacactacatatgatgaccattatctaatac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atctgccacaatatctatggatataatttaacactacatatgatgaccattatctaatac 236

                                          
Query: 425 taacgtacctgtgatgatcattatctaacac 455
           |||||||||||||||||||||||||||||||
Sbjct: 235 taacgtacctgtgatgatcattatctaacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_p23.g1 MSMg01no439_p23.g1 CHROMAT_FILE:
MSMg01no439_p23.g1 PHD_FILE: MSMg01no439_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:16 2005
         (479 letters)



>mm_chr10_100288237_100289115
          Length = 879

 Score =  926 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catattcacacaatagcaagaaactgcgagctttacttccagagaattgaggcactcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattcacacaatagcaagaaactgcgagctttacttccagagaattgaggcactcaag 260

                                                                       
Query: 61  tgctgaaatattacaacttaaagatctttcttcatgcctcaaaactttcatagttacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgaaatattacaacttaaagatctttcttcatgcctcaaaactttcatagttacttt 320

                                                                       
Query: 121 attatttacacattttttgatctaatttttctttccccatatcttttaatttcaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatttacacattttttgatctaatttttctttccccatatcttttaatttcaaaaata 380

                                                                       
Query: 181 ttttgattaattttctttttatttcatgtatggttgttttgcctgactgtctgtgtacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgattaattttctttttatttcatgtatggttgttttgcctgactgtctgtgtacca 440

                                                                       
Query: 241 catacattcggtgctcacggaagccattgatttctatggaacagaaggtacagatgattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacattcggtgctcacggaagccattgatttctatggaacagaaggtacagatgattg 500

                                                                       
Query: 301 tgagccaccacatgagtgctgggagttgaaccccagtaactccagaaaagcagccatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagccaccacatgagtgctgggagttgaaccccagtaactccagaaaagcagccatggt 560

                                                                       
Query: 361 tttaatcactgatgtatctctgaagcttcagtgatgtaattattcccactctttgctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaatcactgatgtatctctgaagcttcagtgatgtaattattcccactctttgctctt 620

                                                                      
Query: 421 gttttatgctttttcatggcgctcaggactcaaggagtttatgatgatgtagttcaggc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttatgctttttcatggcgctcaggactcaaggagtttatgatgatgtagttcaggc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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