BAC Information

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BAC

Clone NameMSMg01-440E09
Chromosome10 (Build37)
Map Location 80,660,632 - 80,661,109
singlet/doubletsinglet
Overlap geneItgb1bp3
Upstream geneMum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3
Downstream geneAtcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440E09.T7 (MSMg01no440_e09.b1)MSMg01-440E09.TJ (MSMg01no440_e09.g1)
ACCAG530429AG530430
length747889
length of high quality
(start - end)		470 (52 - 521)---
definitionCHROMAT_FILE: MSMg01no440_e09.b1 PHD_FILE: MSMg01no440_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:40 2005CHROMAT_FILE: MSMg01no440_e09.g1 PHD_FILE: MSMg01no440_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ACCGCGGAATTACATATAGTAACAATGCTATAGTAGATGAGTGGGTGGAT
TGATGGATGGATGGACCGACGGACGGACGGACAGATGGATGGACGAGTGA
CTGAGTAGTAGTGTTCTGCTAAATAACAAGTCTGAAGCCTCCTTGTCTAC
ATAAGACTTTGAAAATAAAATTGTTGCTTGTAATTTTAAAAACACGCTTC
TTCTTTTGCCTGGGACCTACTGGCTTCCACCTTCTTTATTGACCAAATCA
AGAACCAATTAGGGAACTAGATTTTAGTATCTTCTCCACCCCCACATAAA
ATAATATAAAAATAATACAATAAATTATAAAATTCGTTTTCTTTTTTTCC
TATCCTTTTCTTTCCTTTCCTTTTCCCCTGAGACAAGGTTTCTCTGTGTA
GCCCTGGCTGTCCTGGAATTCACTCTGGCCTTGAAATCAGAGATCTGTCT
GCTTCCCTTCAGAGTGTGGGGTTAAAGGCGTGTGCTTATCACGTCTGGCT
CTTGAATTCCATTTTCTAACACTTGAATTTTACAGACTTCATACTTAAAG
CTATTTTGCTTTGCTTTGTTACGCTCCTCCTGAACTCACTTCTAATTCCC
CTGGTACGTTTGCCTCTTTTATTATTATTGATAACTGCCCTCCTGCGTGT
ACCAATGTGCGTCTGCCCTCCCACTCTTTGTCTACTTTTTCTATTTN

TTGCTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGCCCTTCACTAGAGGTTTGAGCGGAG
GGTGCTGTAGAAACGTTTTATTTGGTTGTCTCCGGTTTATTTTGTGTGCC
CNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCTTCC
CCTCCCCCCCCCCCCCCCCCCCCCCCTCCTTCCCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCCTCCGTCCCCTCCCCCTCCCCCCCCCCCCCTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTTCCTTCTCCCCCCCCGC
CCCCCCCCCCGNCCTCCCCCCCTTTTTCCCCCCCCTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCTCCCCCCCCCCCCCCCT
CTCTCCTCCCCCCCCCCCCCCCCCTCCCCCCCCTCCCCCCCCCCCTCCTC
CCCCCCTCCTCCCCTCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCTC
CCCCCCTCCCCCTTTCCCCCTCCCCCCCCCCCTTCCTCCCGTCCCCCTTC
TCCTCCCCCCTCCCCCTTTCCCCTCTTCTTCCTCCCCCCTCCCTCCCCCC
CCCCCCCTCCTCCCTCCCTCCCTCTCTCCCCCTCTCTCCTCCCCTCCCCT
CCCCTCCCCCCCCCCTCCCCTCCCCCCCTCCTCCCCTCCCCCCGCCCCCC
CCCCCCCCCCCCCCCTCTCCCCCTCCTCCCCCCTTCCCTCCTCCCTCTCT
CTCCCTCCTCTTCCCCCCCCCCTTCCCCCCCCTCCTCCCCTTCCCTCCCC
CCTCCCCCCCCCTCCTTTCCCCCCCCTCCTCTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_e09.b1 MSMg01no440_e09.b1 CHROMAT_FILE:
MSMg01no440_e09.b1 PHD_FILE: MSMg01no440_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:40 2005
         (470 letters)



>mm_chr10_80660611_80661480
          Length = 870

 Score =  801 bits (414), Expect = 0.0
 Identities = 456/480 (95%), Gaps = 18/480 (3%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattacatatagtaacaatgctatagtagatgag----------------tgggtggatt 50
           |||||||||||| || ||||||||||||||||||                ||||||||||
Sbjct: 499 aattacatatag-aaaaatgctatagtagatgagtggatggatggattaatgggtggatt 441

                                                                       
Query: 51  gatggatggatggaccgacggacggacggacagatggatggacgagtgactgagtagtag 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatggatggatggaccgacggacggacggacagatggatggacgagtgactgagtagtag 381

                                                                       
Query: 111 tgttctgctaaataacaagtctgaagcctccttgtctacataagactttgaaaataaaat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttctgctaaataacaagtctgaagcctccttgtctacataagactttgaaaataaaat 321

                                                                       
Query: 171 tgttgcttgtaattttaaaaacacgcttcttcttttgcctgggacctactggcttccacc 230
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 320 tgttgcttgtaattttaaaaacatgcttcttcttttgcctgggacctactggtttccacc 261

                                                                       
Query: 231 ttctttattgaccaaatcaagaaccaattagggaactagattttagtatcttctccaccc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 260 ttctttattgaccaaatcaagaaccaattagggaactagattttagtatcagctccaccc 201

                                                                       
Query: 291 ccacataaaataatataaaaataatacaataaattataaaattcgttttctttttttcct 350
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acacataaaataatataaaaa-aatacaataaattataaaattcgttttctttttttcct 142

                                                                       
Query: 351 atccttttctttcctttccttttcccctgagacaaggtttctctgtgtagccctggctgt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atccttttctttcctttccttttcccctgagacaaggtttctctgtgtagccctggctgt 82

                                                                       
Query: 411 cctggaattcactctggccttgaaatcagagatctgtctgcttcccttcagagtgtgggg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  cctggaattcactctggccttgaaatcagagatctgtctgcttcccttcagagtgtgggg 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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