NNNNNTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATATCTCTCAGCAAGCCCAATAAATCACAGGGCTCAAGTGCT
TCTGAACTCAGGCTTCTACCATCACCAAAATCATTAGGACATTTTCAGGG
CTTTCTGCCTTCCTGTTTCAATTCTTGAACAATGCCTTAACCTCCCCCAC
CCCTGCCTCCCATCCCCCCATCCCCTAGTTCTTTTTTGCCCGTCCATTTC
ACCTGGCTAATGCTGAATCGCAGACATTGGGTTTATGCCCTCCCCAACTG
TGAAGTAATCCTGTGAGTGAGGTGAAAGTGATAAATGCAGCCAAGGTCCA
TCTTGTCTTCTCTATCCCTCTTCTCTCTGAGACAAAGTATGATAACGCTA
TTTCCCCCGGGCAATAAAGACTGGCTCAATTTGGGACACTAAGGTGGTGG
TAGACTTTGATGGAGCTCCTAGGCAGTGTCTTCAATTCAAGGAAGAGATT
CAGAGATTCATCTTCAACCATCACAGATTTTTGAGGATGTCTTGTAATTA
CTGATGAAGACACCGGCCTAAAACTGAGGGGCGCAGAACTCAATCCCTAA
CGTCCCACCTTTTGGATTCTGTTACATGGGATAAAATGTTCCTTGTGCTT
TAGCCCTGTTTGAGTGCAAGGATTTTTTTAAATTCTGCTCCTAACAATAA
AAAAGAAGTTTGCTAAATACCAACAACTAATGCCGGGATTTGAAGGATT

NNGGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTA
CCATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTG
TTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGG
TGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCA
TCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTG
TTCCTCTGTTGATTTTGTTACCCTCTATCTGCAGGCGTGGGAGACAAGCT
CTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCC
TCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCT
GAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGG
CCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAG
CTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGG
TGCCGCCCCAGATCTCTGGGACTCTCTCGCCCGTCCAAAAACGGTTGGCA
CTCTGTTTTCCACACGGTTCCCCGTGCAGCCTGGCCTTCTAAGAGTCCCG
GAACCAATAAAGGTTCCTTCCCGGGGGCCGTTGCTAATAACTTCTTGAGG

Query= MSMg01no440_p11.b1 MSMg01no440_p11.b1 CHROMAT_FILE:
MSMg01no440_p11.b1 PHD_FILE: MSMg01no440_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:35 2005
         (505 letters)



>mm_chr10_90235957_90236862
          Length = 906

 Score =  891 bits (461), Expect = 0.0
 Identities = 491/501 (98%), Gaps = 1/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatatctctcagcaagcccaataaatcacagggctcaagtgcttctgaactcaggcttct 65
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 706 aatatctctcagcaagcccaataaatcacagggctcaagtgcttctgaactcgggcttct 647

                                                                       
Query: 66  accatcaccaaaatcattaggacattttcagggctttctgccttcctgtttcaattcttg 125
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 accatcagcaaaatcattaggacattttcagggctttctgccttcctgtttcaattcttg 587

                                                                       
Query: 126 aacaatgccttaacct-cccccacccctgcctcccatccccccatcccctagttcttttt 184
           ||||||| |||||||| ||||| ||||  |||||||||||||||||||||||||||||||
Sbjct: 586 aacaatgtcttaacctccccccgcccccacctcccatccccccatcccctagttcttttt 527

                                                                       
Query: 185 tgcccgtccatttcacctggctaatgctgaatcgcagacattgggtttatgccctcccca 244
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 526 tgcccatccatttcacctggctaatgctgaatcgccgacattgggtttatgccctcccca 467

                                                                       
Query: 245 actgtgaagtaatcctgtgagtgaggtgaaagtgataaatgcagccaaggtccatcttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actgtgaagtaatcctgtgagtgaggtgaaagtgataaatgcagccaaggtccatcttgt 407

                                                                       
Query: 305 cttctctatccctcttctctctgagacaaagtatgataacgctatttcccccgggcaata 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 406 cttctctatccctcttctctctgagacaaagtatgataacgctatttcccccaggcaata 347

                                                                       
Query: 365 aagactggctcaatttgggacactaaggtggtggtagactttgatggagctcctaggcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagactggctcaatttgggacactaaggtggtggtagactttgatggagctcctaggcag 287

                                                                       
Query: 425 tgtcttcaattcaaggaagagattcagagattcatcttcaaccatcacagatttttgagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgtcttcaattcaaggaagagattcagagattcatcttcaaccatcacagatttttgagg 227

                                
Query: 485 atgtcttgtaattactgatga 505
           |||||||||||||||||||||
Sbjct: 226 atgtcttgtaattactgatga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space:   443520
Effective search space used:   443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)