BAC Information

Click to search

BAC

Clone NameMSMg01-441F11
Chromosome10 (Build37)
Map Location 82,473,315 - 82,473,812
singlet/doubletsinglet
Overlap geneChst11
Upstream geneLOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441F11.T7 (MSMg01no441_f11.b1)MSMg01-441F11.TJ (MSMg01no441_f11.g1)
ACCAG531246AG531247
length830747
length of high quality
(start - end)
129 (73 - 201)498 (76 - 573)
definitionCHROMAT_FILE: MSMg01no441_f11.b1 PHD_FILE: MSMg01no441_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005CHROMAT_FILE: MSMg01no441_f11.g1 PHD_FILE: MSMg01no441_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCGAGCTTGCTAGCCCGCCAAGTATCCCTTCCTTTTGTTTTACTG
ATAGCTGTTCTGTGTGGCTTTTCTGAGATTTGGGTTTTAGAAACAGCTTT
CAAGTGGGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
NTCCTCTCTCCCTTCTCCCCCCCCCCCCCCTCCTTTTCTTTTTTTTTTTT
TCTTTACTCCCCCCTCTCTCCTTTTTTTTCTTTTTTCCCTTTCTTCTTTT
TCCCCCTTTTTTTTTTTTTTTTTTCCCCCCCCTCCCCCCCTTCTCCTCTC
TCTCCCTTTTTTTTTTTTGTCTCTTCTCTCTTCCTTCCTTTCTTCTTCCT
TCCCCTTTTTTTTCTCCTCCACCCCCTATTTTTATTTTTTTCTTCCCCTT
TTCCCCCCCCTCTTTTTTTTTTTTTCCTCTCCTCCTCCTCTCCTCTTCCG
TCCTTGTCCCCTCCCTCTTCCCCTTTATCCCCTCCTCCCCCCCCCCCCTC
CTTTTTTTTCCCCTCCTCTTCTCTTTCCCTCTCCCCTCTCCCCTTCTTCT
TTTTCCTTCCCCCCCCCTTACACCTCTTTTTCTCCCCTCATTCCCCCTTT
CTTCTCCCCCTCCTCTTTCCCGCCCCCCCCTCGTTTCTTATTTTTTTCTC
CTTTTTTCTCCCCCCTTCTTTTTATTTCTTTTATCCATCTTTCCCCCCTT
GTTTCTCCCCTCTCTCCTCTCTCTCTCTCCTTCTTCACTTCTCTACCATC
TTGCTCTATCTTTCCCGCTCTCCCACCTTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGCTCAGGCTGGTCTAGA
ATTTGCAGTCTACAACCACAGCTAGAATCTTCCTCAGTGGCTAGGTGGAC
AGACCTGTACCACCATGCCCAGCAACCCTTTGATTGATGCCAGAGCCTGT
ATCATGAAGAGCAGGGTCCTGCATGGGTAGTCTCTGTCTGCTTAGAAATG
GTCTTATCTTTACTGTATGACTCGGAGTCTTCTTTTGACATTTTCAATAT
ATTGTTACCTTTCATTTAATTGTGAGCGTGTGTGCGTGCATGTGTGTGCG
TTTGTCTGTTCAGGTGACAACTTTCAGGAGTTGGTTATGTCTTTCCACTG
TGTTTGTCCCAGGGAATGAATTTAAGGGGTCAGATTTGGCCCCTTTACCT
GCAGTGCCTCCTCTCTGGCCCTGGTTTTTATGTTCTTTGTACGTTATTCT
TTTATCATTATTTTAGTATGTTGGAGGCTTTTTTTGTGACAGGGTCAGAC
TGACCTGGAACTCAGTATGTCGCTCAGGCCTTGGTCCTTCCAATGCTATA
ACTACAGAAGTGTGTGCGCCCTGTGCTCACCTGACAACAGCCTATCTTGT
TTTATTGGTAGCTCCTTAAACTATATTTGATCTGACCGCCCGGAAGCTGT
GGTGAAAAATGGTTTGCACTGGTGAGCCTGGACTACCCATCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_f11.g1 MSMg01no441_f11.g1 CHROMAT_FILE:
MSMg01no441_f11.g1 PHD_FILE: MSMg01no441_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:05 2005
         (498 letters)



>mm_chr10_82473115_82474012
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagctcaggctggtctagaatttgcagtctacaaccacagctagaatcttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagctcaggctggtctagaatttgcagtctacaaccacagctagaatcttcctc 260

                                                                       
Query: 61  agtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatgccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggctaggtggacagacctgtaccaccatgcccagcaaccctttgattgatgccagag 320

                                                                       
Query: 121 cctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaatggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtatcatgaagagcagggtcctgcatgggtagtctctgtctgcttagaaatggtctt 380

                                                                       
Query: 181 atctttactgtatgactcggagtcttcttttgacattttcaatatattgttacctttcat 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttactgtatgactcagagtcttcttttgacattttcaatatattgttacctttcat 440

                                                                       
Query: 241 ttaattgtgagcgtgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgacaactttc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattgtgagcgcgtgtgcgtgcatgtgtgtgcgtttgtctgttcaggtgacaactttc 500

                                                                       
Query: 301 aggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaaggggtcagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagttggttatgtctttccactgtgtttgtcccagggaatgaatttaaggggtcagat 560

                                                                       
Query: 361 ttggcccctttacctgcagtgcctcctctctggccctggtttttatgttctttgtacgtt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ttggcccctttacctgcagtgcctcctctctggccccggtttttatgttctttgtacgtt 620

                                                                       
Query: 421 attcttttatcattattttagtatgttggaggctttttttgtgacagggtcagactgacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcttttatcattattttagtatgttggaggctttttttgtgacagggtcagactgacc 680

                             
Query: 481 tggaactcagtatgtcgc 498
           ||||||||||||||||||
Sbjct: 681 tggaactcagtatgtcgc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)