BAC Information

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BAC

Clone NameMSMg01-441F17
Chromosome10 (Build37)
Map Location 66,469,955 - 66,470,099
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441F17.T7 (MSMg01no441_f17.b1)MSMg01-441F17.TJ (MSMg01no441_f17.g1)
ACCAG531258AG531259
length930797
length of high quality
(start - end)
---147 (78 - 224)
definitionCHROMAT_FILE: MSMg01no441_f17.b1 PHD_FILE: MSMg01no441_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:06 2005CHROMAT_FILE: MSMg01no441_f17.g1 PHD_FILE: MSMg01no441_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGCCTCATTTCGCCCCGGTTTATAGGATTCATTTTTCCCAAAAGGAC
CCGGGCAAATTCCATTTTTTCGACAACCCCACGGACCCAAAAATATGGGG
CAAAAGGCTTGGAAGCCTAAAGGCCAACATTCTGCCCCCTTCTGGCCTTT
CCCCTTTATTCCTTCACTCCTGATGGGGAATTGTCCCTTGATACGAAAAC
TGGCGACCTTCCTGGTCACATCCCCTTGACAACTATGTAACCATACCTGG
GCTCGAGCCGGGTGTTGTGATGGAGAGATCCGCGTATTTTACCTAGATAA
TTATTGTTCAATCCCTTTTTATACACAATATTAAATTTTTTCCCCAACTA
ACTCTAAATATCTTTTTTTTTCACAAAAATTTACTTTATTAAAATTTCTC
TTCACATTTTTTCTTTATTTAAAACATTTCCTTTTTAATCTCCTTATTAT
TTTACCACACCTTTTTTATTCCTTCATACAATCATTTTTTTAATAATTTT
TTAACGACTACCCTCTTATCCCCCCCCTCTATATCAAAAATATCACCCCT
CCCCACTCTTATTATCCTATCCTATTAACCCATAAACACCTCCCTTTTAT
TCCCCCCTCATCATCCCCCCACCAAACATAATTTCTTTCACATCCTCTCT
TTCTTTATTTTTCTTCCCACCCTCGCCCCTCTTTTTTTCCCTTTCCCCCC
CGCCTACCCAAATATATTTATCCACCATTCTACCCCGCTTACATTACATA
TTGCCCTATAAACATACAATGGTATGNACAAGTCTATTAATCAAAAATTA
TTCATACCCCCATCTCTATTTATATACTCATAACGAGACGAACGATCTTT
ATACTCCTCACCACTACTCAAATAAACTTTCTAAGTCTTTGTTATCCCTC
TCCTCCAATATTCTCCCTCTCTCCTCACTT
NATTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTATCAAATCAATGTCTAC
ACTATTCTAGGATTTTTTGTAGATCCTTGAATAATTCATTTGATTCTCTT
GGAACAGATTTTTAAAGCAATACTCGGGTCCCTTCTTGTCTTTACCTTTT
TTGGGGGTGGGGGTGGGGGAGGNNTNNNNNNNNNNNNGCNNNNNNNCTTT
TTTTNCNNCTTTNTTTCCCTTTTTTTCTTCCCTCTTTTCTTCTTCTTTCC
CTCCCCTCCCCTTTTTCTTTTTTTCCCCCCCCCCNCCCTTTTTTCGCGTC
CCTTTTTTTTTTTTCTCTCCCCTTTCGCGTTTTTTTTCTTCCATTTTTTT
TCGCTCCTTCCCCCCCCCTTTTACCCTATTAAACACTTTCTTTTTTCTTT
TCCCCTTCATTATTTAACCCCCTACTATTTTTTCTTTCTATTATTACCTT
TCGTCTTATGTATACTTTCCTCCCCCCCTTTTTCACCGAACATTTTTCAT
CTTACCCTCTTCTCCCCTTATAAAACTACTTCTTCTTTCTTCCCCCTATT
TATTTTTTTTCCCTTCTTTTTTTCCCAAACTCCGCCCCTCTCTTATTTCT
CCCATCCCCACCATATAACACGCATTCTCCTTTTTTTTTTTTAACCCCTT
CTAATTTTACTTTTTACACCCCGCCCCTTTATTTTCATTCCATTACATAC
TCTTTTACTTATTTTTAATTTCCCCTTCATATCCTCCATCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_f17.g1 MSMg01no441_f17.g1 CHROMAT_FILE:
MSMg01no441_f17.g1 PHD_FILE: MSMg01no441_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:06 2005
         (147 letters)



>mm_chr10_66469755_66470301
          Length = 547

 Score =  281 bits (145), Expect = 2e-80
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttatcaaatcaatgtctacactattctaggattttttgtagatccttgaataattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 actgttatcaaatcaatgtctacactattctaggattttttgtagatccttgaataattc 286

                                                                       
Query: 61  atttgattctcttggaacagatttttaaagcaatactcgggtcccttcttgtctttacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atttgattctcttggaacagatttttaaagcaatactcgggtcccttcttgtctttacct 226

                                    
Query: 121 tttttgggggtgggggtgggggagg 145
           |||||||||||||||||||||||||
Sbjct: 225 tttttgggggtgggggtgggggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)