BAC Information

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BAC

Clone NameMSMg01-441I02
Chromosome10 (Build37)
Map Location 115,785,561 - 115,928,402
singlet/doubletdoublet
Overlap genePtprb, Kcnmb4, Cnot2
Upstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441I02.T7 (MSMg01no441_i02.b1)MSMg01-441I02.TJ (MSMg01no441_i02.g1)
ACCAG531371AG531372
length752744
length of high quality
(start - end)
510 (74 - 583)460 (81 - 540)
definitionCHROMAT_FILE: MSMg01no441_i02.b1 PHD_FILE: MSMg01no441_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:18 2005CHROMAT_FILE: MSMg01no441_i02.g1 PHD_FILE: MSMg01no441_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,785,561 - 115,786,070)(115,927,943 - 115,928,402)
sequence
GGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGTCATTCGCATGGGACCCAAAACATGGAGGCTTCCTGAA
TGAAGAAACATCTAAATTGAAACCTAGAGAGGAGGAGAATTCACCAGGTA
GAGGTGGAACAAGAAATGGAGAATATGTAGAGAAAAATAAACCACTGAGA
GACCACAGAAATGTGGCTTCTGAGGAGCAGGAGGAGCCCTACCTGGGCAG
AGCTCAGGCTTGAAGAGAGCCTAGTCCAAATGGCTTATTTGCTGGGCTGT
CAATGTGGGACCTTCACTCAAAGTCAGGCTGCCCCATAGTCACAGAGGCA
TCCCAGGTATAGACACATTTTGGAAGGTTACTCGGAGTTGACAGCAGAGA
ATACATGGGGAGGTTCCATCTAGGTTTCTGTAGGAGAGACTGGAGAAAGG
TGATGGAAGTTAGCACGGATCAGGATCAGGAGTCACTGAAGATCTTGCCC
TTTCAGCAGAGTTGACATGTATTGGGTAATGACTCTATTCAATGACAGTA
TTCCGGGGGGCTGTCCGTGTCTCCCCACTCCATCACTACAATAACTATAC
GAAGGACAGATTCTTGATTTCCTCGTGTGCAGGTGGAAAGTCATTTATCC
AAAAATGTTGGTAAAGACGTTGCTTTCAGGCTGGGGGCTTGCCTGGCCTT
CTGTCCCTCTGGTTTTGCTGGTACTCACGACAGCTTGTCTTTCTAAGTAT
AT
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTCCATTTCTCTGAGTG
ATTGTTAGTATTACAAAAGTATGAGGCAGCTTTTAAGTAAATTTCAACAG
AAGAAAAGTATTTCTAACAAATTTCAAAACAAATTTGGGCAGCACATTCG
TTGTTGCTTTGGGGCTATCTCTTCAGTGTGCTGAGTTGATAGGATGTTTG
CATTTTAAGAAGACAGTAGGAAGTGTTACCAGATAGAAACCATGGGAAGG
TTGACCTTCTGGAAGTTCTTATAAATTTTATTGACATGGAGAAAGATGAG
CCCAATAGAAAATACAGAAGAGGGTGACAAGTGGTTTGAGTTTTGGTTTA
GGTTTTTGTCTTTAGGTTTCTCAGTGGTAAATGTGGCTGGTGCTCAGTCT
TCAGGCTGTAGCTGGTATTTCAGCAGTTAGAATTATTCGAAATGTCTTAG
TTCCAAAGAGTGTATTCTTCAGCTACCACTTTAAATGTCTTGTTTGCGAA
CGAGTGTGATCAGCGGTGATGTGGACTGTGTCCGTAAGACACCAAGACCA
GTGGAAACTGTTCCCCGTGTGTCCTGCGCGCCCCCTCAGTCACTAATTGG
GTGAGAAGCGCAGCATTCTTTTATTTCCNGTGAGAAATTATTGGACTCCC
TTCCCGCTTTTCCTCAGACCTTTATCCCTACGTTGGTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_i02.b1 MSMg01no441_i02.b1 CHROMAT_FILE:
MSMg01no441_i02.b1 PHD_FILE: MSMg01no441_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:18 2005
         (510 letters)



>mm_chr10_115785361_115786270
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacccaaaacatggaggcttcctgaatgaagaaacatctaaattgaaacctagagagga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 201 ggacccaaaacatggaggcttcctgaatgaagaaacatctaagttgaaatctagagagga 260

                                                                       
Query: 61  ggagaattcaccaggtagaggtggaacaagaaatggagaatatgtagagaaaaataaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaattcaccaggtagaggtggaacaagaaatggagaatatgtagagaaaaataaacc 320

                                                                       
Query: 121 actgagagaccacagaaatgtggcttctgaggagcaggaggagccctacctgggcagagc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 actgagagaccacagaaatgtggcttctgaggagcaggaggaaccctacctgggcagagc 380

                                                                       
Query: 181 tcaggcttgaagagagcctagtccaaatggcttatttgctgggctgtcaatgtgggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggcttgaagagagcctagtccaaatggcttatttgctgggctgtcaatgtgggacct 440

                                                                       
Query: 241 tcactcaaagtcaggctgccccatagtcacagaggcatcccaggtatagacacattttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactcaaagtcaggctgccccatagtcacagaggcatcccaggtatagacacattttgg 500

                                                                       
Query: 301 aaggttactcggagttgacagcagagaatacatggggaggttccatctaggtttctgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggttactcggagttgacagcagagaatacatggggaggttccatctaggtttctgtag 560

                                                                       
Query: 361 gagagactggagaaaggtgatggaagttagcacggatcaggatcaggagtcactgaagat 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagactagagaaaggtgatggaagttagcacggatcaggatcaggagtcactgaagat 620

                                                                       
Query: 421 cttgccctttcagcagagttgacatgtattgggtaatgactctattcaatgacagtattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgccctttcagcagagttgacatgtattgggtaatgactctattcaatgacagtattc 680

                                         
Query: 481 cggggggctgtccgtgtctccccactccat 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 cggggggctgtccgtgtctccccactccat 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_i02.g1 MSMg01no441_i02.g1 CHROMAT_FILE:
MSMg01no441_i02.g1 PHD_FILE: MSMg01no441_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:18 2005
         (460 letters)



>mm_chr10_115927743_115928602
          Length = 860

 Score =  820 bits (424), Expect = 0.0
 Identities = 451/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactccatttctctgagtgattgttagtattacaaaagtatgaggcagcttttaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caactccatttctctgagtgattgttagtattacaaaagtatgaggcagcttttaagtaa 601

                                                                       
Query: 61  atttcaacagaagaaaagtatttctaacaaatttcaaaacaaatttgggcagcacattcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atttcaacagaagaaaagtatttctaacaaatttcaaaacaaatttgggcagcacattcg 541

                                                                       
Query: 121 ttgttgctttggggctatctcttcagtgtgctgagttgataggatgtttgcattttaaga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgttgctttggggttatctcttcagtgtgctgagttgataggatgtttgcattttaaga 481

                                                                       
Query: 181 agacagtaggaagtgttaccagatagaaaccatgggaaggttgaccttctggaagttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agacagtaggaagtgttaccagatagaaaccatgggaaggttgaccttctggaagttctt 421

                                                                       
Query: 241 ataaattttattgacatggagaaagatgagcccaatagaaaatacagaagagggtgacaa 300
           |||||  | |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ataaagctgaaagacatggagaaagatgagcccaatagaaaatacagaagagggtgacaa 361

                                                                       
Query: 301 gtggtttgagttttggtttaggtttttgtctttaggtttctcagtggtaaatgtggctgg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtggtttgggttttggtttaggtttttgtctttaggtttctcagtggtaaatgtggctgg 301

                                                                       
Query: 361 tgctcagtcttcaggctgtagctggtatttcagcagttagaattattcgaaatgtcttag 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 300 tgctcagtcttcaggctgtagctggcatttcagcagttagaattattcgaaatgtcttag 241

                                                   
Query: 421 ttccaaagagtgtattcttcagctaccactttaaatgtct 460
           |||||||||||||||||||||| |||||||||||||||||
Sbjct: 240 ttccaaagagtgtattcttcagttaccactttaaatgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)