Query= MSMg01no441_n23.b1 MSMg01no441_n23.b1 CHROMAT_FILE:
MSMg01no441_n23.b1 PHD_FILE: MSMg01no441_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:49 2005
(249 letters)
>mm_chr10_17894053_17894701
Length = 649
Score = 466 bits (241), Expect = e-136
Identities = 247/249 (99%)
Strand = Plus / Plus
Query: 1 agaccaaccctcccacagagaagaatttttattgaattcatatgatattgccaaattgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccaaccctcccacagagaagaatttttattgaattcatatgatattgccaaattgca 260
Query: 61 accattttcttcatattaaaaataatgaatttcgtgtggttcactgaaatcacaattaag 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accattttctacatattaaaaataatgaatttcgtgtggttcactgaaatcacaattaag 320
Query: 121 actaactattaaaaaacaacaacaattaagttaggcccagtggtgtgaactcatgtacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaactattaaaaaacaacaacaattaagttaggcccagtggtgtgaactcatgtacct 380
Query: 181 gtagtctcaggtcatgggtgtgtggggtaggaggtgccattgtgagcccaggagctctag 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gtagtctcaggtcatgggtgtgtggggtaggaggtgccactgtgagcccaggagctctag 440
Query: 241 ggctgactg 249
|||||||||
Sbjct: 441 ggctgactg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no441_n23.g1 MSMg01no441_n23.g1 CHROMAT_FILE:
MSMg01no441_n23.g1 PHD_FILE: MSMg01no441_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:49 2005
(440 letters)
>mm_chr10_18063406_18064245
Length = 840
Score = 741 bits (383), Expect = 0.0
Identities = 419/437 (95%), Gaps = 12/437 (2%)
Strand = Plus / Minus
Query: 1 agcatcagcacacagcaagtgcaaggcaagctcggcctccactaaacactctctcaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agcatcagcacacagcaagtgcaaggcaagctcggcctccactaaacactctctcaaaga 734
Query: 61 acaacaaagccgcagaagcagctcgaatccaaaattcccatcctggcagaagcttggcca 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 acaac-aagccgcagaagcagctcgaatccaaaattcccatcctggcagaagcttggcca 675
Query: 121 ttgatcctctaaaaatgttaaaacaggctttcttgagtgagaggacacagttgagacata 180
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 674 ttgatcctccaaaaatgttaaaacaggctttcttgagtgagaggacacagatgagacata 615
Query: 181 cagaaatacagggatcaaatgaacagtagggttctacatgctgtggctgcagcctgcctt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cggaaatacagggatcaaatgaacagtagggttctacatgctgtggctgcagcctgcctt 555
Query: 241 cctggggagctgagagctaggtctccgtggatagcaaagagattagaggggtcatttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctggggagctgagagctaggtctccgtggatagcaaagagattagaggggtcatttctg 495
Query: 301 gagaatccctgcagcctaggatgacctcaccactaacaagaggcttcctcatcaacctgc 360
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 gagaacccctgcagcctaggatgacctcaccactcacaagaggcttcctcatcaacctgc 435
Query: 361 ccatccagagggccagcatcctctcaaacagccacccaccaccaccactgccaccgccat 420
||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 434 ccatccagagggccagcatcctctcaaacagtc-ccc----------ctgccaccgccat 386
Query: 421 gtccccgctctcaagca 437
|||||||||||||||||
Sbjct: 385 gtccccgctctcaagca 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
