Query= MSMg01no441_p16.b1 MSMg01no441_p16.b1 CHROMAT_FILE:
MSMg01no441_p16.b1 PHD_FILE: MSMg01no441_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:57 2005
(513 letters)
>mm_chr10_21385833_21386744
Length = 912
Score = 859 bits (444), Expect = 0.0
Identities = 492/512 (96%), Gaps = 9/512 (1%)
Strand = Plus / Plus
Query: 6 gaattcttcatatgactatagataacactaccactactgcctggtttctctgcacatcct 65
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcatatgactatagataacactgccactactgcctggtttctctgcacatcct 265
Query: 66 ttaaccctttgagcccttgctgcatataatttactctgatgattcctttccagatcttct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaaccctttgagcccttgctgcatataatttactctgatgattcctttccagatcttct 325
Query: 126 gtaccgctctattttctgatctgcaattccagtgttaataattgatttttggtgtgtgcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtaccgctctattttctgatctgcaattccagtgttaataattgatttttggtgtgtgcc 385
Query: 186 cacatgtgcattcatgtgtcgtcgccccccacacacacacactttattcagctttaaaga 245
||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacatgtgcatgcatgtgtc-cccccccccacacacacacactttattcagctttaaaga 444
Query: 246 aaatgaaatcctgaaagctgcaggaaaatttttt----tggaatatattatactaaatga 301
|||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct: 445 aaatgaaatcctgaaagctgcaggaaaa----ttgaagtggaatatattatactaagtga 500
Query: 302 ggttactgtgctggctagtttcatgtcaacttgacacaagcaaaagtcatctgagaggat 361
||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 501 ggttactctgctggctagtttcatgtcaacttgacacaagcgaaagtcatccgagaggag 560
Query: 362 ggaacttacttcagttaagaaaatgtctccatcagataggggtgtaggcaagcctggaag 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ggaacttacttcagttaagaaaatgtctccatcagatagggctgtaggcaagcctggaag 620
Query: 422 catttttcttaattagtgattgatgtgggagggcccagtgcattgtgggtggtgccatcc 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtttttcttaattagtgattgatgtgggagggcccagtgcattgtgggtggtgccatcc 680
Query: 482 ctgggctggtggtcctggggtctatatgaaag 513
||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggctggtggtcctggggtctatatgaaag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_p16.g1 MSMg01no441_p16.g1 CHROMAT_FILE:
MSMg01no441_p16.g1 PHD_FILE: MSMg01no441_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:57 2005
(464 letters)
>mm_chr10_21526873_21527735
Length = 863
Score = 745 bits (385), Expect = 0.0
Identities = 451/483 (93%), Gaps = 24/483 (4%)
Strand = Plus / Minus
Query: 2 aggaaactcaggcccacacagagcaaccctgtctctgaaaaaaacctaacaaacaaaaca 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 aggaaactcaggcccacacagagcaaccctgtctctgaaaaaaa-ctaacaaacaaaaca 474
Query: 62 aaagaacacctctagaagccgtttccaaaccaagacaaacaaggtggtagtggccatgag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaagaacacctctagaagccgtttccaaaccaagacaaacaaggtggtagtggccatgag 414
Query: 122 tcacatcagtaaaaacaaagaagtgtatttatgacaggacattcttcacctctgcctcca 181
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 413 tcacatcagtaaaaacaaagaagtgtatttatgacaggacatccttcacctctgcctcca 354
Query: 182 aaatgtatatagccctggctacaactccaatgggagacatttccatatgagtgtgggaat 241
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 353 aaatgtatatagcactggctacaactccaatgggaggcatttccatatgagtgtgggaat 294
Query: 242 ttgaatagactgttgcaaagttatactttttcagatgttaaggagcccatgagcatgttg 301
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttgaacagactgttgcaaagttatactttttcagatgttaaggagcccatgagcatgttg 234
Query: 302 ctagagtcttgtaagatcaatctctgctttcatctccctctccctctccccct---cctc 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 233 ctagagtcttgtaagatcaatctctgctttcatctccctctccccctccccctgcccctc 174
Query: 359 cc-ctctccctctcaccctcccctcaccctcccc-tc---tccc--tc---------tac 402
|| ||||||||||| |||||||||| |||||||| || |||| || | |
Sbjct: 173 cctctctccctctctccctcccctccccctccccctcccctccccctcccctccccct-c 115
Query: 403 cctctc---cctccccctctccctttccctctctctctcctaccctaaagcttcctgaac 459
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114 cctctctctcctccccctctccctttccctctctctctcctaccctagagcttcctgaac 55
Query: 460 cta 462
|||
Sbjct: 54 cta 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
