BAC Information

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BAC

Clone NameMSMg01-442D11
Chromosome10 (Build37)
Map Location 32,376,186 - 32,565,812
singlet/doubletdoublet
Overlap geneTcba1
Upstream geneLOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442D11.T7 (MSMg01no442_d11.b1)MSMg01-442D11.TJ (MSMg01no442_d11.g1)
ACCAG531914AG531915
length794846
length of high quality
(start - end)
207 (79 - 285)165 (77 - 241)
definitionCHROMAT_FILE: MSMg01no442_d11.b1 PHD_FILE: MSMg01no442_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:17 2005CHROMAT_FILE: MSMg01no442_d11.g1 PHD_FILE: MSMg01no442_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,376,186 - 32,376,392)(32,565,651 - 32,565,812)
sequence
TCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAACAATGCGC
NGGAATCAAGAACATACCATATTGCAGAGGTTGTCAACTATTTCTCACTG
AACTATTTTCTTACAAGATTACTCTTTTTTACAATAATCAGAAAAGAGAT
CTAATACTTCTTTCTGGATGAAGCAATGGTAAATGAGAAAAAAGTGCTAG
ACAGATGATATCTGGATGTCTAAAAAATTCCAAAGGGAAGCTTCATATTG
TACAATTTTAGCAGTGTCAAGGATATTTTAATTCAGAAAAAAGGGGAATA
TAACTAATACAGAAAGAAAATTTGTATCTTTTAATCGATAAGCTTACCAA
AAAGATGAGATAGATATACGAATCATATTAATAACCATTTGAATTAATAG
CATACCGAGCTCCTTTGACCCCCCCCCCACTGGTCCATTGTTATATTATA
TCATCCCCTCTCTATTTCACACTTATTTTTTCGCTTTTTGCTATGCTTTT
TTTTTTGACACCTTTATTTTTTTCCCCCCTTTTTTTTCATACACTTTACT
CCCTTTCCCCTCTCTTTGTTTTCCAATTTTTATTTCTTTTCTTTTTCCCC
TCTTTTTTTTTCTTTCTTCCTTTTTTTTTCTCTTTTTCTTTTTTCTTTAT
TTCTTTTTTTTTCTTCCCGCCCTCTTTTTTTTTTTCTCCTTCCTCCCCTT
TTCCTTTTTTCTCCCCCCCTTTTTTTTTCCCTTTTTCCCCTCTTTTCTTT
TTTCACCCCCCTTTTTTTTTTTTTTCTTCTCCTTCCCTCCCCCG
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACGTGATTTCTATATATTAGAG
TTATTACCTTCAGTTTTTCTTTCCTGTAAAATAAAATAATTGTGTGATTT
TGGGATTGGAGTCTTTCTTTAAATGTTCATTTAAATTTACTAATGAACAA
ATCTGGATCATTTTTTATTTTGGAAGATTGTTTATGTGCGCGCACGCCCC
CTTTTTTTTTTTCTCCCCCCCCCTCTCTCCTTTTTTTCCCCTCTCCCTCC
CCCCAACAGGCAACAACCTTTCTCATTTTTCCCCCCCCCTTTTCCCCCCT
TCGCCGGATGTTTTTTTTCTCCCCTTTTCTCCCCCTTTCTTCTTCTCTTC
TTTTTCTCCCCTCCCCCCCCCCCCCCCTCTTCTTTTTTTTTTTTTATCTC
TTCCCTCCCTCCCTCTCCCCCTCTTTCCTTTTTTTCCTTCCCCCTCTCAT
TCTACTTTTCCTTTTTCGTTCCTACTTTCTCCATTCCTCTTTCCCCCCTT
CTTTTTTTCTTCTCCCCCCCCCCCCCCCTTGTTTTCTACCTTTTCACCTC
TCTCTTTCCTTATTTTTCCTCCCCTTTCCCTTTTTTTTCCCCCCTCTCTT
CTCTCTCCCTCCCCTTCTCCTTCTCTCCCCACCTCATTCTCTCACCCCAT
CCCCTCCTATTTTTTTTTTTTCTTTCCCCCGCCTCTCTATCCCTCTCCCC
CTTTCTCTCACTTCTCGTCACTCTTTCCTCTTCTCCCCCCCTTCTCTCTT
ATCTCTTCCTTCTCCTCTTCTCCCCCCTCCCCACCTCCCCCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_d11.b1 MSMg01no442_d11.b1 CHROMAT_FILE:
MSMg01no442_d11.b1 PHD_FILE: MSMg01no442_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:17 2005
         (207 letters)



>mm_chr10_32375986_32376592
          Length = 607

 Score =  362 bits (187), Expect = e-104
 Identities = 202/207 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttgtcaactatttctcactgaactattttcttacaagattactcttttttacaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttgtcaactatttctcactgaactattttcttacaagattactcttttttacaataat 260

                                                                       
Query: 61  cagaaaagagatctaatacttctttctggatgaagcaatggtaaatgagaaaaaagtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cagaaaagagatctaatacttctttctggatgaagcaatggtaaatgagaaaaaagtcct 320

                                                                       
Query: 121 agacagatgatatctggatgtctaaaaaattccaaagggaagcttcatattgtacaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 agacagatgatatctggatgtctaaaaaattccaaagggaagcttcatattgtacaatca 380

                                      
Query: 181 tagcagtgtcaaggatattttaattca 207
            ||||||||||||||||||| ||||||
Sbjct: 381 aagcagtgtcaaggatatttgaattca 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no442_d11.g1 MSMg01no442_d11.g1 CHROMAT_FILE:
MSMg01no442_d11.g1 PHD_FILE: MSMg01no442_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:17 2005
         (165 letters)



>mm_chr10_32565451_32566015
          Length = 565

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacgtgatttctatatattagagttattaccttcagtttttctttcctgtaaaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttacgtgatttctatatattagagttattaccttcagtttttctttcctgtaaaataaaa 303

                                                                       
Query: 61  taattgtgtgattttgggattggagtctttctttaaatgttcatttaaatttactaatga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taattgtgtgattttggtattggagtctttctttaaatgttcatttaaatttactaatga 243

                                                     
Query: 121 acaaatctggatcattttttattttggaagattgtttatgtg 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acaaatctggatcattttttattttggaagattgtttatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)