BAC Information

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BAC

Clone NameMSMg01-442E19
Chromosome10 (Build37)
Map Location 95,508,320 - 95,712,989
singlet/doubletdoublet
Overlap geneEG432491
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
Downstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442E19.T7 (MSMg01no442_e19.b1)MSMg01-442E19.TJ (MSMg01no442_e19.g1)
ACCAG531978AG531979
length807819
length of high quality
(start - end)		440 (70 - 509)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no442_e19.b1 PHD_FILE: MSMg01no442_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:24 2005CHROMAT_FILE: MSMg01no442_e19.g1 PHD_FILE: MSMg01no442_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,712,550 - 95,712,989)(95,508,320 - 95,508,566)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGGGTTTCCCAGATTTGGATGGTGTGATAAAATTACAGTAA
AGAATCTTCTCAGATCAAATATTATTGACGTGATTAAATCAGCAGGAACA
TGGTGAACCACCGGTACATGTGGTCTAATTATCTATGATCCAGCAGGTTC
TCAATGTCTCCAAGGAGAGAGCGAATGACTAATCTTTCACCCTAGTCAAA
GACAGCATAATAAATAAAAGCAAAATGTGTGTACTTCATTCTTTGTCTTT
CTGTACATGCTGCTCACAACAAAAATATGAGACATGAAAGGAATGTCCAA
CTGTGACCTTATTTAAGAGGAAGTAGTCTCTGCAGAACTAGACCAAGAAA
TATCTTTACGCTGCTCCCTTCGATGTAATGATTCACCTTCTGCAAATAAC
ACTTTCTCCGCAGTGTGAATAAGAGCTCCTTATTATCCTGGAGTTTTAGC
AATTTATCCCAACATCTTCCTCACTATTGCTTGGGTTAAGGATCTTCTGC
TATGGATCCACTGGAGTTTCCTGAGCCTTTGGACCATTTTTATACCAATC
TTAAAAGGGCTTGAAATTTAACCTTTCAAATTCTTTCCCTCTTCCCAATC
CCTTAAGGTTTAACCCCTTTAATTAAATTTGTTTTTGATTCGTGTCGGCA
TAAGAGAAACATCTTGTTTTGTTTTATTATTAAACTAACTTTTTTCCTGA
TATATACAAAAACACCACACTTTTTTTCTCCCGTCTCTTTACTGCTCTAA
TACTATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAATGCCATTTTGGTTGAAATGTT
TCCTCTTCATCCTTCAGACTAAGTTTGTAGAAAATGAACAAAACTAAAAA
GAAATATTAAAAAACAATCAATCCGACCTTTCATTGTATATATACATTTA
ATACCCACTTGGCCATTTAAAGATACTTTTGTGAAGATTCAATACCCACA
TGATTTTGTTACCTTTTTCCTGTAGCCTACGGTTCCAGAATGAATTGTTT
ATTTCCCTATTTGACTCAAATATTTATTAAACTCTGAGCAATTTAATATG
CACATTCTTAAGCATGTGACATAGCACAGAGTAGATGCTATTCTGTGTGC
TGTGTATATAAAAAGCATAATTCTAAGTGACCTGTCCTAGAGCTATTTGT
ATTTTTTTCTCCTACTTTTTATGCTAACATTTCCCTTAATGATATTCACA
GAGAAGATTAGTTCTTATGCATATAAATGCGATTTCTAGGCTAAAGGAAC
CCAGAAAGCTACCTCATCCTAGTTATCGCCAAAACCCCCCGAACAACTGG
ACTTCCAAATTCTCCTCTCTTATAACCTAATTTGACTATGCGGAATCTCT
CTCTCCCAACCCCTCACTTTTTATTACTTCTTTTTTCCCTTCTTTTCGCC
CCCCCTCTCCTTCCCCTCTCTTATCCATATCTCCTCCCTTTACTAATCAT
CCCCACCATCCTCTGTTCTCCTTCACCTTTCTCCTTACCTCGACTATCTC
CCCCCTTCTTTCCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_e19.b1 MSMg01no442_e19.b1 CHROMAT_FILE:
MSMg01no442_e19.b1 PHD_FILE: MSMg01no442_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:24 2005
         (440 letters)



>mm_chr10_95712350_95713189
          Length = 840

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttggatggtgtgataaaattacagtaaagaatcttctcagatcaaatattattgac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 640 agatttggatggtgtgataaaattacagtaaagactcttctcagatcaaatattattgac 581

                                                                       
Query: 61  gtgattaaatcagcaggaacatggtgaaccaccggtacatgtggtctaattatctatgat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 580 gtgattaaatcagcaggaacatggtgaaccaccggtacacgtggtctaattatctatgat 521

                                                                       
Query: 121 ccagcaggttctcaatgtctccaaggagagagcgaatgactaatctttcaccctagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccagcaggttctcaatgtctccaaggagagagcgaatgactaatctttcaccctagtcaa 461

                                                                       
Query: 181 agacagcataataaataaaagcaaaatgtgtgtacttcattctttgtctttctgtacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agacagcataataaataaaagcaaaatgtgtgtacttcattctttgtctttctgtacatg 401

                                                                       
Query: 241 ctgctcacaacaaaaatatgagacatgaaaggaatgtccaactgtgaccttatttaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgctcacaacaaaaatatgagacatgaaaggaatgtccaactgtgaccttatttaagag 341

                                                                       
Query: 301 gaagtagtctctgcagaactagaccaagaaatatctttacgctgctcccttcgatgtaat 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 340 gaagtagtctctgcagaactagaccaagaaatacctttacgctgctcccttcgatgtaat 281

                                                                       
Query: 361 gattcaccttctgcaaataacactttctccgcagtgtgaataagagctccttattatcct 420
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gattcactttttgcaaataacactttctccgcagtgtgaataagagctccttattatcct 221

                               
Query: 421 ggagttttagcaatttatcc 440
           ||||||||||||||||||||
Sbjct: 220 ggagttttagcaatttatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_e19.g1 MSMg01no442_e19.g1 CHROMAT_FILE:
MSMg01no442_e19.g1 PHD_FILE: MSMg01no442_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:24 2005
         (247 letters)



>mm_chr10_95508120_95508766
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatgccattttggttgaaatgtttcctcttcatccttcagactaagtttgtagaaaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatgccattttggttgaaatgtctcctcttcatccttcagactaagtttgtagaaaa 260

                                                                       
Query: 61  tgaacaaaactaaaaagaaatattaaaaaacaatcaatccgacctttcattgtatatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacaaaactaaaaagaaatattaaaaaacaatcaatccgacctttcattgtatatata 320

                                                                       
Query: 121 catttaatacccacttggccatttaaagatacttttgtgaagattcaatacccacatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttaatacccacttggccatttaaagatacttttgtgaagattcaatacccacatgat 380

                                                                       
Query: 181 tttgttacctttttcctgtagcctacggttccagaatgaattgtttatttccctatttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttacctttttcctgtagcctacggttccagaatgaattgtttatttccctatttga 440

                  
Query: 241 ctcaaat 247
           |||||||
Sbjct: 441 ctcaaat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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