BAC Information

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BAC

Clone NameMSMg01-443E16
Chromosome10 (Build37)
Map Location 81,552,692 - 81,552,940
singlet/doubletsinglet
Overlap genenone
Upstream geneCreb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik
Downstream geneBC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443E16.T7 (MSMg01no443_e16.b1)MSMg01-443E16.TJ (MSMg01no443_e16.g1)
ACCAG532733AG532734
length7401,012
length of high quality
(start - end)
249 (75 - 323)---
definitionCHROMAT_FILE: MSMg01no443_e16.b1 PHD_FILE: MSMg01no443_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:51 2005CHROMAT_FILE: MSMg01no443_e16.g1 PHD_FILE: MSMg01no443_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCTATCAATTTACCAATTCATCTAAATAGCATTACTTCATGA
AAGTTCATCTTCATGTTGATCTGTAGGAAATTTGGCTAATAGGGTGGATC
CGAGTTCGAGTCTATCCTGGTCTACACACCAAGTTCCAGGACATCCAGGG
CTAGACAGAGTCTGGTTGGAGAAACAGTGAAGATGCTCACAAGAGAGAGA
CTTATGAGTCCCAGCTTTATACAATAACAAGAACAAGCTGCAGGTGGCAA
AAACTTGCTTTTCCAAAGAGGTGTTTTTTAGATAGATTAAACTTATAATT
GAATAACAGCAGCAAGAAATAATGAACAATCTACAGTAAACTCATTTCTA
TTTGCTATATCTGAAAGGAGCATGAAAACACATTCCAAGCACAGTTCTCT
TTTTGAAGAAACTAATGTCACAAGTCTCTTGGGTTCTTTGCTTGAAGTGT
TCTCACAAGTACTTAGAATTCTCCTCTTGTGACTCCATTTCTGGATTGTG
TTTAGACAATATACCCAAAATTGGAATTTAAAATAATATAAGGGAGACCT
TTTTTATACATTGGGAGAGTCACTACCCCCAAAACCGGACCTCCTACCGG
AAAATTTGTTTTCCTCCGGAGTTTGCCATTTTACTTAGAAAATTCCAACT
TTTTTTTTTTCGGCTTATTTTTTATAATAAAATTATACCN
ATTAATTCGCGCCATGTTAATTGACAGATAGGATGGGGCGTGTTTCCACG
AAAAGGGGGGGGATTTGACACCGCCTTATTCCCAAAAAAGGGGGTGGTGG
GTAGGGAGAATAGGGCAAGAAATTAAAACGTGGGGGCGTTACTACGCCCC
GGCTCCCCTTGTTTGCCCGCTTAACTTTCTATTTGTTTTTGTTTTTCGGT
TGCCCCATCAGATATATGGAAACAGGCGGGGTTAACAATAAAACCGCGGT
ACTGCGCGTAAATCTTATTTCTATTATTTAACGGTAGCCAGCGATTACGC
GATATTAGATAATACGAACGTTATAGCGACGTACCTCGGCCAAGTGTTTG
AGGGACGGGGGGTGGGGGGTGGTTTTGACATTGTCCGATCCCCGTCAGAG
GGGAGGAAGAGATGTTTATTACTCGCCAGAAGTCGCGGGTACATGATAAG
TTGTATCCATGGGCGGATATAAAAAGCACGAAGTGCGCGAAATAATTCAT
TGAGATGTGGTCTGCGGATAAAGGGATGGGATAATATTTCCGCCTTTTAT
TTCGCCGGTGAACCGAACGGGGGTGTTGAGCGAATTTGTTTAGTTTGGAA
GGGGTAGACGCTTCGGTATTAAGCCCACTTGCGCCAATATATATTATTTC
GCTCCCGCGCATGGCGTACTGGTAAGATTAAGAGGCAGAAGGTGGATCAG
CCCGACAAATGAGGGGGCCGGCGACAAGGGTAGTGTGACCGCCTGCCCTT
TATTATAGTGTAGTTTCGGCGGGTAAGACGAAACGGTGGGACGATAAGAT
TTGTTTGTGCCAGAAACGGCGCGAGGGAGAGAAGGAGGCGTGATAAGGTA
TTAGTGGCTCCGCGCCATTTAGATGAAGTAGTTGGGCGAGTGCGGCGGCA
CCGGAATGATGACATATAGTACAGTGGAGGGTGTGGAGCAGAATAGAGTA
GCTTTGCATTTAAGCGGTCGATACGCACGCGAATTAGGTGTAGGTGCGCA
GAGACTTAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_e16.b1 MSMg01no443_e16.b1 CHROMAT_FILE:
MSMg01no443_e16.b1 PHD_FILE: MSMg01no443_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:51 2005
         (249 letters)



>mm_chr10_81552492_81553140
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatctaaatagcattacttcatgaaagttcatcttcatgttgatctgtaggaaatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatctaaatagcattacttcatgaaagttcatcttcatgttgatctgtaggaaatttg 260

                                                                       
Query: 61  gctaatagggtggatccgagttcgagtctatcctggtctacacaccaagttccaggacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaatagggtggatccgagttcgagtctatcctggtctacacaccaagttccaggacat 320

                                                                       
Query: 121 ccagggctagacagagtctggttggagaaacagtgaagatgctcacaagagagagactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagggctagacagagtctggttggagaaacagtgaagatgctcacaagagagagactta 380

                                                                       
Query: 181 tgagtcccagctttatacaataacaagaacaagctgcaggtggcaaaaacttgcttttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtcccagctttatacaataacaagaacaagctgcaggtggcaaaaacttgcttttcc 440

                    
Query: 241 aaagaggtg 249
           |||||||||
Sbjct: 441 aaagaggtg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)