BAC Information

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BAC

Clone NameMSMg01-443F23
Chromosome10 (Build37)
Map Location 93,793,924 - 93,794,360
singlet/doubletsinglet
Overlap geneLOC100041955
Upstream geneLOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472
Downstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F23.T7 (MSMg01no443_f23.b1)MSMg01-443F23.TJ (MSMg01no443_f23.g1)
ACCAG532794AG532795
length748758
length of high quality
(start - end)
436 (72 - 507)407 (79 - 485)
definitionCHROMAT_FILE: MSMg01no443_f23.b1 PHD_FILE: MSMg01no443_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:57 2005CHROMAT_FILE: MSMg01no443_f23.g1 PHD_FILE: MSMg01no443_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCGC
GGAATTCTCCGGGCTTGTCTCAAATTCACTACCTTGAGCATTTCTTTGAA
AGATTTGTATTTATGCACACTCGTGTTTTATTATGTTTATGTGTGTGCTG
AGTGTAAATCACATGTGTGCAGGTGCTCTTCGAAGCCAGAAGAAGATATT
GTACCCCCCCCTTCCCCAGAGCTGCAGTTACAGGCAGTTGCCAGCTGCCT
AGCATGGGTGCTGGGAACTGAACTCAGGTCTTTTAGAAGGGCTCCAAGTG
CTGCTAAACAACCACTTAGCTATCTTTTTAGTCCTTCTTGGAAGATTTGA
ACTCTTTGCCATATCCTTCTGGGTAGCTGGGACCTTCAGCCACATAGCAC
CATTCCTAGCAAAATTCAATTTTTGTTTTTAAAAAATTAAATACTTTTAT
TGAGAAATGATCTTGTGTCATGGACTCATTCTAAGTACACAGATCACTGA
ATCCAGATCAAATTCGAAGTAGTGGCATTCCTTCCGTTTTCTCAGGTAGA
GCAAAGCTCATAATAAAACGGACCCACACAAATGCCGCGGGCCCCTATTA
GAGTTAGCACTCCAACTGTGTGGTGTAATAGCCCGGAAAAAATATTCCCA
GTTCGCGGGGTGGGGGGGGGGGGAAAAATTTTTCCCTCTCTTTTCTTCTC
CCTCTCCTTTTTCTTTTTCTTTCCCCTTCCTTTTTCCTTTTCTTTCCG
TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGAGAGCTGGGCATGGTGG
TATATGTCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGAACATCTATC
TATGTGAGTTCCAGGCCAGCCAGGACTACTTAGCAAGACCCTGTCTCAAA
AAACAAAACAGAACAAAAGAGAATTGGTTTTGTTTATTTTTTTTCTTTGC
TTGTTTGTTTGTTTGTTTTAAATAGGGATTGGTGATGGCTCACTGGTTAA
AAGAACTTATTGCTCTTCCACAGGACCTGAGTTTAATTCCTAGCACCCAC
CTGGTGTTCTACAACCTTCTTTATCAGGGGATCTAACACCTTATGATGTA
CATTCAAGTATGCAGGCAAGACACCCAAAAGATAAAATCAATATCTAAAA
AAAATGTTAAAAGTTAAAGAATTCCCCAGGGTAGTGGCATGTGTACATGC
GCATATGTGCTTATGTGTTTGCCTGTGTACATATGTGCAGAATACATGTT
TGTGCGTGTATGTGTGCACGCGAATAGTGTGTGCTCCTGTATGCGGTGAA
AGAGTGTGTGCCGCGCCCCTTTTTTATATCCTTCCTTCCCCTTTTCCTCC
TCATCACTTCCAAATTCCCTATACCCCATCTTCCGCCCTCTCACTCTTTT
CCACCCCCTTTTCCTTCCCTTTTTTTTTTCCCTTTCCTTCCACCTCTTGC
CCATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f23.b1 MSMg01no443_f23.b1 CHROMAT_FILE:
MSMg01no443_f23.b1 PHD_FILE: MSMg01no443_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:57 2005
         (436 letters)



>mm_chr10_93793725_93794560
          Length = 836

 Score =  723 bits (374), Expect = 0.0
 Identities = 422/438 (96%), Gaps = 3/438 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcactaccttgagcatttctttgaaagatttgtatttatgcacactcgtgttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 aaattcactaccttgagcatttctttgaaagatttgtatttatgcacacacgtgttttat 259

                                                                       
Query: 61  tatgtttatgtgtgtgctgagtgtaaatcacatgtgtgcaggtgctcttcgaagccagaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatgtttatgtgtgtgctgagtgcaaatcacatgtgtgcaggtgctcttcgaagccagaa 319

                                                                       
Query: 121 gaagatattgtac-cccccccttcccc-agagctgcagttacaggcagttgccagctgcc 178
           |||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 gaagatattggacaccccccc-tccccaagagctgcagttacaggcagttgccagctgcc 378

                                                                       
Query: 179 tagcatgggtgctgggaactgaactcaggtcttttagaagggctccaagtgctgctaaac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagcatgggtgctgggaactgaactcaggtcttttagaagggctccaagtgctgctaaac 438

                                                                       
Query: 239 aaccacttagctatctttttagtccttcttggaagatttgaactctttgccatatccttc 298
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaccacttagctatctctccagtccttcttggaagatttgaactctttgccatatccttc 498

                                                                       
Query: 299 tgggtagctgggaccttcagccacatagcaccattcctagcaaaattcaatttttgtttt 358
           |||||||||||||| ||||||||| |||||||||||| ||||||||  ||||||||||||
Sbjct: 499 tgggtagctgggacgttcagccacgtagcaccattcccagcaaaataaaatttttgtttt 558

                                                                       
Query: 359 taaaaaattaaatacttttattgagaaatgatcttgtgtcatggactcattctaagtaca 418
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 559 taaaaaattaaacacttttattgagaaatgatcttgtgtcatggactcatcctaagtaca 618

                             
Query: 419 cagatcactgaatccaga 436
           ||||||||||||||||||
Sbjct: 619 cagatcactgaatccaga 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)