BAC Information

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BAC

Clone NameMSMg01-443H13
Chromosome10 (Build37)
Map Location 17,160,253 - 17,160,489
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H13.T7 (MSMg01no443_h13.b1)MSMg01-443H13.TJ (MSMg01no443_h13.g1)
ACCAG532870AG532871
length732744
length of high quality
(start - end)
245 (77 - 321)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no443_h13.b1 PHD_FILE: MSMg01no443_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:05 2005CHROMAT_FILE: MSMg01no443_h13.g1 PHD_FILE: MSMg01no443_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACATCC
GCGGAATTCCAAAGTTTAACCAGTAAATTTATGTCCTTATTTATACTTCT
CAAAAAAAAAAAAAAACCCTACCACCTTGCATGCATAGTTTCAAAAATGG
TTATCTCAATAGACTTTTCCAACATGACATTATTTCACAGTACCAAAAAT
TTTGATTGGGCCATATTTGTTTATCAAGCAGAACAGATAATTTAAAATGA
GTCCTATAGGTTTCAATATTCCCTATCTATCCTCTGTAGCAATGTAGAGT
CATTCCTATTTAATTAGGTAATTCATTGTATTTGCGAACAATTAAGAATG
CAATTTAATCCAGGAATTTGGGAAACATCTAGGGATTCATTCACTATGAC
CTCCACACTGAGTTTCCTCTGCAAAGCAGCATACAGCTAATCACTTAGAA
CTATAAAACCTAAGACCCCCCTTTTTTCTCCAAAGGCTACCTATGTCTCG
TCTCATATATTAAACATATCTTCTATGTGGATGGATGGATGTTGACTGTA
TTTGTTTAACTGCCTTTCAAAACACAGTTTGAGTGAATTAGCCACCTTAC
ATCATCTTTGCCCCGCATAAAGTGACAAGACCCTATTGGCCATGTGTCAA
AATTATGTAGTAATTCCCCCGCCATCCTTCCCTAAAAACGCTTTTTTTAT
AAATATCTCGTTCGCCATTACAGTAAACCCCG
TTTTTTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTGCAGACCAGGCTAAC
CTTGAACTCACTGAGATCCAACTGCCTCTGCCTCCCAAGTGCTGGGATTA
AAGGCGTGAGCCACTACGTCCAGTGGTATGCAGCCTGTTCTAACCATGTC
TTAATGATCTCGCATGGTGTGAAGAGACACCGTGATCAAAGTAACATAAA
AAGAAAGCATTAGATTTGGGGGGTTGCTAATACAGTTCAGGGGGTTAGTC
CATGTCTATCATGGCCGGAAGTATGTTTTTAGGCAGGCAGGCATTGAGAG
ATTACATCTTGATCCTCAAGTTGGAGGCAGAGAGACTCTGAGAAAACCTT
TGTAATGTATTATAATGTCCTCAGTAGAACAAAAACAGCAATTTGGGCTG
AATTCTAGAGGAGGTGCCAGTAGTTCATGTGCTCGGCCTTCACATATACA
CCCTGTATCTTTGTCTTGACTTCCTCAGCTATGCTTTCTCTGAGACCCAT
ATTATTTTCAGAAAAATAGCTTGAAAACTGTTGGTGTGGAACCCCCCGAG
CTCCGGATATGTCTTTATCATGAAATTTTTAAACTTCTACTTGGGTCTCT
CTAGTTTCCAATGCTTTCCCTCTCACCCTCTATTCCCCTCGACTTTCCCT
ATTCCTTTTATTTCTCCCCTTCCCTTCATCGTTTTCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h13.b1 MSMg01no443_h13.b1 CHROMAT_FILE:
MSMg01no443_h13.b1 PHD_FILE: MSMg01no443_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:05 2005
         (245 letters)



>mm_chr10_17160053_17160689
          Length = 637

 Score =  397 bits (205), Expect = e-115
 Identities = 232/245 (94%), Gaps = 8/245 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatgtccttatttatacttctcaaaaaaaaaaaaaaaccctaccaccttgcatgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 201 atttatgtccttatttatacttctcaaaaaaaaaaaaaaaccctaccacct----tgcat 256

                                                                       
Query: 61  agtttcaaaaatggttatctcaatagacttttccaacatgacattatttcacagtaccaa 120
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 257 agtttcaaaaacggttatctcaatagactcttccaacatgacattatttcacagtaccaa 316

                                                                       
Query: 121 aaattttgattgggccatatttgtttatcaagcagaacagataatttaaaatgagtccta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 317 aaattttgattgggccatatttgtttatcgagcagaacagataatttaaaatgagtccta 376

                                                                       
Query: 181 taggtttcaatattccctatctatcctctgtagcaatgtagagtcattcctatttaatta 240
            |||||||||||||| |||||||||||||||||||||||||||||    |||||||||||
Sbjct: 377 aaggtttcaatattctctatctatcctctgtagcaatgtagagtc----ctatttaatta 432

                
Query: 241 ggtaa 245
           |||||
Sbjct: 433 ggtaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 637
Length adjustment: 9
Effective length of query: 236
Effective length of database: 628
Effective search space:   148208
Effective search space used:   148208
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)