BAC Information

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BAC

Clone NameMSMg01-443H14
Chromosome10 (Build37)
Map Location 99,740,090 - 99,740,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
Downstream geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H14.T7 (MSMg01no443_h14.b1)MSMg01-443H14.TJ (MSMg01no443_h14.g1)
ACCAG532872AG532873
length7431,458
length of high quality
(start - end)
249 (73 - 321)---
definitionCHROMAT_FILE: MSMg01no443_h14.b1 PHD_FILE: MSMg01no443_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:05 2005CHROMAT_FILE: MSMg01no443_h14.g1 PHD_FILE: MSMg01no443_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTCTAATATACCCTTAAAATATTTGCATTTTTGCTACTTTTA
AATTTTCTTAATGGATTATAAACATGTTCCTTAAATTTAGCAAATACTTT
TATTAAGGACATAATTGTGTGCTTTGTAATTTAAAATACAGAGTTGGAAG
TAATTCTGACTTCCAGAAAGAAGACATTAAAAAACCACATCTCCCAAGAT
TAAATAAAATGTATCCTTCAGAATTCAATCTATTAATGACTCTGAAGCTT
TCTATTTACCTGGCTTATGACTTCTTANTTCTCGGCAGAGCTGGTACTCT
GATTTGAATGAAAAGAGCTTATGATCACTTAAATTATTGTTTGATATAAG
AATGTAATAACAGTTTTCCTTCTTGTTTATCTTGCCTGCTCCTTGTTCCC
TCTCAAATTCATGGTCTCTTTTACTGTTACGTATATATGCATGTGTATAT
GTATATGCATATGTATACGTATACGTATATGTATATATACGCATATATAT
ATAAATCCCGCCTCGTTCATCCTTTTAGTATTACCGGTATTATTCGATTT
CCGGGCTTATCCCTTAAGATACACATACCCCCCCCATGTGTCCCCCTTAC
CGCGCCTTATCTATTTTCGTCCCAGTTCCCAAGCAGTTCTTTATGCACCA
ACGCATTTCATTGTATCTCTTTACCGTCTTCCATCCGCCCCCC
CTGTAAAAATAGCAGCAGTGGTGTTGAGCTTTATAGCGCAGAAGTCACTA
ATACGGATGCAACTACATAACACGGTCGATTAAAAGAAACGGGATACGTG
ACAACGTATACACGCCACGTGATGTAATGACCCGCGAGTGTACAACACCG
TATCTGTTAGATACATAAGAGCGGTCCGTAACATGTTACACACCCCTCGC
GAACTGATTGAATTACACGCTTATAATTACCCAAGGCATTGTGGTCCCAC
CAGGTTTATATTTCTGACAGTGTGAGTATTATTGATAACATAAAAGACTC
GGTCAACGCCTGTGAGTGAAACAAACGTATCACATAGGGAAGCGCGCGAA
TACACGAGGAATGTCGAGGAGGACGCGGCGCGCACTGTGATTATACATAC
ACCGCGGCTNCACCCCATTCAGGATNGGTACATGGTGACAACGCACCTAA
GCCNTATATGAGAGCGGCGATCCATCGTTAACAAACCAGTTGCGGCGCGC
CGCGAATACGCCGGCAATAAATACATCAGTGCATGTCGATACTATGTAAC
CCGANGAACAAGACGCGTACCGCGCGCCATAATAATTTAACGTGGCCGTT
GAGACACAACATGTGCGTCCGCNTGAGAATTATATAGCGTCAAACGATGA
NCGACCACGGTGACGAATATGTCTATACACGAGTAATNTAACGAACCGGA
AATGCGGCGGAGCGGTACTAACGCCGTAACACCACTGAGGAGGAAATATA
GAAAGATAGTGACTAACGAAGCGAGGGCGCTCATAGCGCGCGCCCTGACA
TATCCGTGGAGGGCAATTATTATCGACGCACGAAAACACCTCTGACAGGC
GCGAATGCGCGCTATATAATATAGTAGGCGCCGAAATAACAGAGGCGACG
AGTGTATATCGGCGCGCGATACAGAGACACACTGATGGTTGCGGGGCGCG
ATACAACGCTATAGTAATGTATTGCGACCTGCGCCGCCCCCACAGCAGAG
CAACNTAATATACAGGAAGACGCGGCCGACGCGCGCCGCCGCGAAAATTT
GCAACGAANNCCCGGAAAGAACCCGCAAGAGNAGGACACGCGCGCGATAT
ANAAATATGTGGTGTGTCAACATATTAACACACCACACTAGTCGGACATT
ATTAAACGAAATGGTATGATACGATCTAGGAGGAGAGAGTGCACAGCACG
GCGAGCGCACGACGTGANCGATATACGTACTACGCGCACGCGCAAACACA
TATATATAAAATCAGCGCGCGGACGNANGAAATATATNGTGTATAACATA
CGATNCCATGCGCAGCCATTNTATCAGAGCGCGAGCGCCACTATAATACC
TCGCGGCGCGAGAATGCATGAGTGAGTGATGTCGTGATAACTATAATATA
CCCGCTGCACCGGTTGATATATCAGACGGCTGATCGAGAAATAGATATGA
CATATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h14.b1 MSMg01no443_h14.b1 CHROMAT_FILE:
MSMg01no443_h14.b1 PHD_FILE: MSMg01no443_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:05 2005
         (249 letters)



>mm_chr10_99739890_99740538
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaatatttgcatttttgctacttttaaattttcttaatggattataaacatgttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatatttgcatttttgctacttttaaattttcttaatggattataaacatgttcctt 260

                                                                       
Query: 61  aaatttagcaaatacttttattaaggacataattgtgtgctttgtaatttaaaatacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttagcaaatacttttattaaggacataattgtgtgctttgtaatttaaaatacaga 320

                                                                       
Query: 121 gttggaagtaattctgacttccagaaagaagacattaaaaaaccacatctcccaagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggaagtaattctgacttccagaaagaagacattaaaaaaccacatctcccaagatta 380

                                                                       
Query: 181 aataaaatgtatccttcagaattcaatctattaatgactctgaagctttctatttacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaatgtatccttcagaattcaatctattaatgactctgaagctttctatttacctg 440

                    
Query: 241 gcttatgac 249
           |||||||||
Sbjct: 441 gcttatgac 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)