BAC Information

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BAC

Clone NameMSMg01-443M13
Chromosome10 (Build37)
Map Location 126,013,767 - 126,013,931
singlet/doubletsinglet
Overlap genenone
Upstream geneLrig3, LOC100043547
Downstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M13.T7 (MSMg01no443_m13.b1)MSMg01-443M13.TJ (MSMg01no443_m13.g1)
ACCAG533107AG533108
length702810
length of high quality
(start - end)
241 (78 - 318)174 (85 - 258)
definitionCHROMAT_FILE: MSMg01no443_m13.b1 PHD_FILE: MSMg01no443_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:29 2005CHROMAT_FILE: MSMg01no443_m13.g1 PHD_FILE: MSMg01no443_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAAAATTAATCTCATGTCACTAAACGANTCACTATTTCAAGAGGACC
GCGGAATTCACTCAATGCCAAAAGAACTCCCCAGGACTCAGGTAGACTCA
CCTCTCTGGCTCGGCTATCTATAGCACAATCATCTTTCCTCATAAACTCG
GGCTAGCTCCACTCCATATAGGTCATTGTCCTGGTGACCACTGCACTATT
CTGGCATATCCTGGGATCTCTAATGTGATCAAAGCTGGACCTTGACCAAT
ATTCTCCTCCTCACCTGCTGCCCTTCCATTTTTCAAAACCAGTACCATCT
GGGAGACCATTACACATTACTTCNTTAGTTCTTCTGCTAGCAGGATGTAC
AGCCTTGGCTCCCTCTGGACCTCATCTTCTGTGTTCTGACCCTAAGAAAA
CACATCTCAGAAATTATGACCTCTATAACGCTAATATCTTAGTAAAAGCA
GCTGACCAGAACCACAGATTCTTAATTCAAAATATACAAACGGCCCTGAT
AGAGTCGCTGAGGAACTTTCAAACCGTGTAACTTTACAAGTCTGGACTAC
ACTGTCTGCATTTCTCTCATCACATGAGCCTGTTCAGATACTTTCAAACA
GTCAAACGGATATTAATTTCCAGGTACTCCCCGGCTAGTTTTATTTTTTT
TACCGAAAGAGGCTCTGCTCCGCATCAGGACCTGCCCTTCATTGAGATAC
CG
TTTTTTTCACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGATATATTTAAAA
TAATTATCATGTTGTATTCCTTCATTTTTTTTCCTGACTAAATGGAGGGG
AAGGAATATTTAAATGGTAAAAGAAAAAAAGCACTGGACAAGACAAAAAA
TGAGAGAGAGAGAGTGAGAGAGAGAGAGTGAGAGAGAGAGAGATAGGGAG
AGAATATGATAGAGACTTTGCCCCCCTTTTTTCTTCCCTTTTTCCCCCTC
TCCCCTCCCCCCTCCCTTCCCCTCTTTTTTTTTTTTTTNCCCTTTTTTTC
TTCTTTTTCTTCTTCTTCCCCTTTTCCCCCTTTCTTCCTTCTTTTTTTTC
CTTTCCTTCCCCTCTCCTTTCTTCCCTTTTCTCTTCTTTTTTTCCCCCCC
CCCCTCCTCCTTTCTTTCTCTCTTTTTTTTCCCCCTCTTTTCCCCTTTTT
CCCTCCCCCCTTTTTTTTTCTTTTTCCCCTCCTTTCTTCTTCTTCCTCTC
TTTTTTTTTTCCCTTTTTCCCNCCTCTTCTTTTTCTTCTCTTTTTCCCCC
CCCTCTCTCTTTTCTTTTCTCCTCTCTTCTNCCCTTTTTCCCTCCCCTTT
TCTCTCCCTTCTTTCCTTCCCTCTCCTCCTCTCCNCTCTCTTTTTTTTTT
CTCCCCCCCCCNTCCTTTTCTCCTCTCCCCCTCTTTTTNNTTTTTTCCCC
CCCTTTTCTCCCTTTTTTCCCCTCTTTTTTTTTCCCTTTTTTTCCCCTCT
TCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m13.g1 MSMg01no443_m13.g1 CHROMAT_FILE:
MSMg01no443_m13.g1 PHD_FILE: MSMg01no443_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:29 2005
         (174 letters)



>mm_chr10_126013614_126014188
          Length = 575

 Score =  269 bits (139), Expect = 7e-77
 Identities = 162/175 (92%), Gaps = 11/175 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagatatatttaaaataattatcatgttgtattccttca-ttttttttcctgactaaat 59
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 ccagatatacttaaaataattatcatgttgtattccttcatttttttttcctgactaaat 259

                                                                       
Query: 60  ggaggggaaggaatatttaaatggtaaaagaaaaaaagcactggacaagacaaaaaatga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggaggggaaggaatatttaaatggtaaaagaaaaaaagcactggacaagacaaaaaatga 199

                                                                  
Query: 120 gagagagagagtgagagagagagagtgagagagagagagatagggagagaatatg 174
           |||||||||||        ||||| |||||||||||||  |||||||||||||||
Sbjct: 198 gagagagagag--------agagactgagagagagaga--tagggagagaatatg 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 575
Length adjustment: 8
Effective length of query: 166
Effective length of database: 567
Effective search space:    94122
Effective search space used:    94122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)