BAC Information

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BAC

Clone NameMSMg01-443P12
Chromosome10 (Build37)
Map Location 60,360,278 - 60,508,272
singlet/doubletdoublet
Overlap genenone
Upstream geneDnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
Downstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443P12.T7 (MSMg01no443_p12.b1)MSMg01-443P12.TJ (MSMg01no443_p12.g1)
ACCAG533247AG533248
length724769
length of high quality
(start - end)
241 (71 - 311)220 (78 - 297)
definitionCHROMAT_FILE: MSMg01no443_p12.b1 PHD_FILE: MSMg01no443_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:44 2005CHROMAT_FILE: MSMg01no443_p12.g1 PHD_FILE: MSMg01no443_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,360,278 - 60,360,517)(60,508,053 - 60,508,272)
sequence
CCAATTATAATTGCGGCGCTAATAGAATCCTAATTCAAAACACGGCGGAA
TTCATTGATTGCAGAAACGGGTGGTTGTGAAGCTACATGCTGATGCTGGG
AACTTAACCCATGTCCTCTCCAAGAACAGCAAGTGCCCTTAACTGCTGAG
CCATCTCTCCTGCCCCAGACATCTTTGCTTTTAGAGACTCATGTAATTAC
ACTAGAGTAATTTATTCCTCAGCCAATGTAATTTAGTATAATCATTCCTT
TTTAAGGCCAAACAATTAGTAAACTTAATTACATTGGGAAAGTACCCCCT
TCGAGCTGGGTGTANGTANGTACAGCTTTAACCCTAGCACTTAGGAGGCA
CAGGCATGTATATCTCTAATCTTGGGGACTAGGCAGTTCTACATAGAGAA
TTCCAGGACAGCCAGTTCCAGGACTCTCCTGCACAGAGAAACACTGTTTA
AAAAAAGAAAGAAAAGTTTCCTTTTCTATGTATAGCAGTGTATAGACTGT
CCAGACTAGCACACCGATCTTTACCAGAAATGCACCCCGCCATGTGTGCA
AATGCACACGCATGCTGTATGATCCTAATGAACCTTGTTCTCCCAGTCGT
TTTTTTTGTTTAATGTACCAATTCACCCCCCCCTGCTCCCTTTTTTTATT
TCATACAACCTACTAATCCCCCCCCACCACCCCCCCCCCCCTTCCCTTTA
TCTTTATCCATTCCCTCCCCCCCC
TTTCATAGCATTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATAATTTGTAAACTCAGCGGAG
TGGCTTTTACTGAGGCATGTCGGGAAGTGATAAACAATATCTTGGATAGA
TTTACAGAGCCTCTGAGTGCCTGCATCTCACTGACTCCTGCTTTCTCTAA
GAGCCACATGCGGCCGAAGTACAGGACCAAGAAGGCTTTTGTGGCTGACA
GCCAGGGCCTTTCATGGGTTTTTATAAGACAGGTTTACTGCGTGGAGGAG
CCTGGGGATACGGGGAGGTATTTATTTGTCTCAGTCTGGCACTCAGGCAA
GAAGAAGAAAGCAGCTCAGATGCATAGGTGGCCCTGCCCCTCCCGGGCCC
CGCCCCTTCCTCTAGGTCCCTTCCCTCCTTCAGAGTCCCATCCTTTCCAG
GGCCTCATAGGGTATTTCCAGGCCAGGGCCAGGAATTGAAGTCCTGCATT
CTGACTTGTTTCCCGACCCCAAGGAACAATGTTTCCGTTTCCTTTTACCT
GCCGACCCAGCTTCCCCCTTTTTTTCTTCCCATAAACCCTTTCTTTTTTC
TTCTTATCCCCCACCTCCCTCCCACCCGCCTATAATTTTATCCACCTCTT
ACTTTTGTCCCTATCAGGTTTTTAAAAATATATCCCACTTCTTGGCGCTC
CTTATCTCGCGAATCATTTTGATCTTATATTTTTCTCCCCCCATTTTTCC
CCCCTCTTAATTTTTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_p12.b1 MSMg01no443_p12.b1 CHROMAT_FILE:
MSMg01no443_p12.b1 PHD_FILE: MSMg01no443_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:44 2005
         (241 letters)



>mm_chr10_60360078_60360718
          Length = 641

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggttgtgaagctacatgctgatgctgggaacttaacccatgtcctctccaagaacagc 60
           |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| |
Sbjct: 201 gtggttgtgaagctacatgcggatgctgggaacttaactcaggtcctctccaagaacatc 260

                                                                       
Query: 61  aagtgcccttaactgctgagccatctctcctgccccagacatctttgcttttagagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgcccttaactgctgagccatctctcctgccccagacatctttgcttttagagactc 320

                                                                       
Query: 121 atgtaattacactagagtaatttattcctcagccaatgtaatttagtataatcattcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaattacactagagtaatttattcctcagccaatgtaatttagtataatcattcctt 380

                                                                       
Query: 181 tttaaggccaaacaattagtaaacttaattacattgggaaagtacccccttcgagctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaggccaaacaattagtaaacttaattacattgggaaagtacccccttcgagctggg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_p12.g1 MSMg01no443_p12.g1 CHROMAT_FILE:
MSMg01no443_p12.g1 PHD_FILE: MSMg01no443_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:44 2005
         (220 letters)



>mm_chr10_60507853_60508472
          Length = 620

 Score =  410 bits (212), Expect = e-119
 Identities = 218/220 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataatttgtaaactcagcggagtggcttttactgaggcatgtcgggaagtgataaacaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 cataatttgtaaactcagcggagtggcttttacagaggcatgtcgggaagtgataaacaa 361

                                                                       
Query: 61  tatcttggatagatttacagagcctctgagtgcctgcatctcactgactcctgctttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatcttggatagatttacagagcctctgagtgcctgcatctcactgactcctgctttctc 301

                                                                       
Query: 121 taagagccacatgcggccgaagtacaggaccaagaaggcttttgtggctgacagccaggg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taagagccacatgcggccggagtacaggaccaagaaggcttttgtggctgacagccaggg 241

                                                   
Query: 181 cctttcatgggtttttataagacaggtttactgcgtggag 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cctttcatgggtttttataagacaggtttactgcgtggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)