BAC Information

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BAC

Clone NameMSMg01-444A02
Chromosome10 (Build37)
Map Location 57,926,624 - 57,927,206
singlet/doubletsinglet
Overlap geneRanbp2
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1
Downstream gene6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A02.T7 (MSMg01no444_a02.b1)MSMg01-444A02.TJ (MSMg01no444_a02.g1)
ACCAG533275AG533276
length724730
length of high quality
(start - end)
586 (47 - 632)520 (82 - 601)
definitionCHROMAT_FILE: MSMg01no444_a02.b1 PHD_FILE: MSMg01no444_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:46 2005CHROMAT_FILE: MSMg01no444_a02.g1 PHD_FILE: MSMg01no444_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGTCTACTTTACCAGCAATTCGAAAATGGTTAAAACAGCTCT
TCCACCATTTGCCTCAGGAGACGTCAAGGCTTGAAACAAATGCACCTGAA
TCAATATGTATTTTAGATCTTGAAGTAAGCAATGATGATAATTAATTAAA
TATTTTTAGTGTTTGTAATTTGTTTTTCTAACTTACTATTTTTTAAAATC
AAACAGGTATTCTTACTTGGAGTTATATATACCAGTCACTTACAATTAAA
GGAGAAGTGTAATTCTCACCACACTTCCTATCAACCATTGTGTTTGCCAC
TTCCTGTGTGCAGACAGCTTTGTACAGAGAGACAGAAGACGTGGTGGGAT
GCAGTTTGTACTCTGATTCACCGAAAGGCGCTGTAAGTAGTAAACAGTGA
TACTCCTTAGATTAGGGCCCGAGTTTTACTAGGGCTTTAGTTTAGTTGTC
ACGTGAAGACACTTAACATATATGTAAGTGCTGAACTGCAGTTCTTTAAA
ATAATTCAATTAAACTTACTTTTTTAAGACCTGGAACCTCAGCAAAATTG
CGACTTCTAGTTCAACGTGAAATAAACAGTCTGAGAGGCCAGGAAAAGCA
CGGCCTTCAACCTGCTCTGCTTGTGCATTGGGCCCAGAGTCTTCTAAAAA
CAGTGAGTTTCATGAAATGTTAAT
NGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGTAGACGAGGCTGG
CCTCGAATTCAGAGATCTGCCCGCCTCTGCCTCCCAAGTGCTGGAGTTAG
AGACGTGTGCAGTCACTTCCCGGCTCAAATCTGGTTTTTAATAAGCCAAA
GGCAATAGTCAACTGTGAACTGTGTATGTGTACTGGCTAATTTTGTGTCA
ACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTAATTGAGGAAATG
CCTCCATGAGATCCAGCTGTAAGGTATTTTCTCAATTAGTGATCAAGGGG
GAAAGGCCCCTGCGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTA
TAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAACGAACATC
CCCCCAAGGCCTCTGCATTAACTCCTGTTTTCTGACCTGCTTGAGTTCCA
GTCCTGACATCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCCGAAT
AAACCCTTTCCTCCCCAACTTGCTTCTTGGTCCTGATGTCTGTGCAGGAA
TATAAATCCTGACTAAGACAGCGTGTGCTAGGGTATTTGGAGTATCGCAT
AACTTGACTTGCTATTTCCGGAGCATTGAGCAGCGTCAGGCACGTCCTAC
TGGGTAATAGCTTTAATTATCCCTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a02.b1 MSMg01no444_a02.b1 CHROMAT_FILE:
MSMg01no444_a02.b1 PHD_FILE: MSMg01no444_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:46 2005
         (586 letters)



>mm_chr10_57926421_57927406
          Length = 986

 Score = 1120 bits (579), Expect = 0.0
 Identities = 582/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgtctactttaccagcaattcgaaaatggttaaaacagctcttccaccatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgtctactttaccagcaattcgaaaatggttaaaacagctcttccaccatt 263

                                                                       
Query: 64  tgcctcaggagacgtcaaggcttgaaacaaatgcacctgaatcaatatgtattttagatc 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tgcctcaggagacgtcaaggcttgaaacaaatgcacctgaatcaatctgtattttagatc 323

                                                                       
Query: 124 ttgaagtaagcaatgatgataattaattaaatatttttagtgtttgtaatttgtttttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgaagtaagcaatgatgataattaattaaatatttttagtgtttgtaatttgtttttct 383

                                                                       
Query: 184 aacttactattttttaaaatcaaacaggtattcttacttggagttatatataccagtcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacttactattttttaaaatcaaacaggtattcttacttggagttatatataccagtcac 443

                                                                       
Query: 244 ttacaattaaaggagaagtgtaattctcaccacacttcctatcaaccattgtgtttgcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttacaattaaaggagaagtgtaattctcaccacacttcctatcaaccattgtgtttgcca 503

                                                                       
Query: 304 cttcctgtgtgcagacagctttgtacagagagacagaagacgtggtgggatgcagtttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttcctgtgtgcagacagctttgtacagagagacagaagacgtggtgggatgcagtttgt 563

                                                                       
Query: 364 actctgattcaccgaaaggcgctgtaagtagtaaacagtgatactccttagattagggcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actctgattcaccgaaaggcgctgtaagtagtaaacagtgatactccttagattagggcc 623

                                                                       
Query: 424 cgagttttactagggctttagtttagttgtcacgtgaagacacttaacatatatgtaagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgagttttactagggctttagtttagttgtcacgtgaagacacttaacatatatgtaagt 683

                                                                       
Query: 484 gctgaactgcagttctttaaaataattcaattaaacttacttttttaagacctggaacct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctgaactgcagttctttaaaataattcaattaaacttacttttttaagacctggaacct 743

                                                      
Query: 544 cagcaaaattgcgacttctagttcaacgtgaaataaacagtct 586
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cagcaaaattgcgacttctagttcaacgtgaaataaacagtct 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)