BAC Information

Click to search

BAC

Clone NameMSMg01-444B19
Chromosome10 (Build37)
Map Location 25,111,105 - 25,111,648
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
Downstream geneEpb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444B19.T7 (MSMg01no444_b19.b1)MSMg01-444B19.TJ (MSMg01no444_b19.g1)
ACCAG533357AG533358
length807752
length of high quality
(start - end)
---594 (80 - 673)
definitionCHROMAT_FILE: MSMg01no444_b19.b1 PHD_FILE: MSMg01no444_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:55 2005CHROMAT_FILE: MSMg01no444_b19.g1 PHD_FILE: MSMg01no444_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCAAGCGGCCTGCGCTGGGGACGCGATCAGACTTCCCAAAAGAACGG
GACCCGCCTTTTTTTGCCGTTCCGGTTTTCCCATCCCTGTACCCATCTAA
GTGGACGTGAATACGTCCCCCGGGACTTTTGGCCACGCCGATTTTTATCT
GCTTCCCGCGGTCCCCCATTCTTTCAATTCAACTCTAGCGAATGTGTACC
TCCGTCCCTCCCTTTTATGTCTTGTTGGTTTCCCCCCCANCCCCAATTTC
CCNNNNGGGGGACCCACTCAACCCCTAAAAAATTTGGGGGGGCCCGGCTT
AAATACGGAACTCCACCTAATTATTGCCAGCAGGAAATCCCGGCGGGAAA
ATTTCAATAATTCATCCTATCCCCAAGAAATCCGTGGGGGAAAACGTGGG
GGGGGGGGGGTTTTTTTTTTGGGGAAAAANAAAAAAAAAAAAAGGGGGGA
AAACGGGCGGNGGGGGGGGGGGGGGCCCCTTTTTTAAAAAAGGGGGGAAA
AAGAAAAAACCCCCGGGGGGGGGGCCCCCCACANAAAAAAAAAAAAAAAG
CAATNAAGNNAAGTGTTTCTCTTTCCCGCCCTGATGGGACACCATGATTT
GAGCCCAAGGATAAGCCCCCCNTTCANAAAAAAAAAAAAAAAGAGAGGGG
GGGGGGGCCCTTCTTATATATTTTGCGGGGGGGGGGGGAAAAGAAAAAGA
CTTTTTAGGTTTCCCTTTTTGGGGGGTGGGCCGCGCCCTGGCGTCCACCT
TTATAAGATAAAACATTACAAGGCCGNAGGACCCCGAGGTGTAGAATCTC
CCGCCCA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGTTCTAACTTATAAAC
GCATACAAAAAAATATCCAAAAAATAAAGTAAAGAATATTAAGATACAGT
TTAGGTTGGTCCCAGTAGCACAGGCTCCAAACTGCTCTGACAACTGAGGT
GTGGGGGTTTGCATGTTCAAGGGCAGCTTAAACACTTAATGAAACTACTT
TCTTAAAACAAAAAAATAAAAATAGGGTTGCAGATGTAGTTCAGTACTGA
AATCTCTACCATGTGCAAGACCCTATATTCAACTCCCAGTACGACAAAGA
ATAAATTGATAAAACAAATGTAGCCATATATTAAATGAGGTGCCCTCAAA
AAAGGCAAAATGACTGAACCTGTGACAGACAGACAGACAGACAGAGAAAA
CACGAACACATTCCCTAAATCCCTAAATGTTCATTTGCATAGTAAGCCAG
ATAGACAAGTACGAAAAAATATAAAATGATTTTTTTAAGCCATAATGGAA
TCTACTCAAGTGTAACAACAGGGCCAAGTCCAGCCAGGACCACACAGCAA
GACCATGTCTCAAAAGAAAAGCTGACAGGTGAGGGTGGTTCTGCAGCTAA
GAGCACTTGTCACACTTGCTGAGAAGCCGAGTTCAGTTCCCAGCACCTAC
CCAGTGGTTCACAAACTGTTCCCAGGACCCACACCTTCTTCTGACCTTTA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_b19.g1 MSMg01no444_b19.g1 CHROMAT_FILE:
MSMg01no444_b19.g1 PHD_FILE: MSMg01no444_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:55 2005
         (594 letters)



>mm_chr10_25111105_25112098
          Length = 994

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/545 (98%), Gaps = 6/545 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggttctaacttataaacgcatacaaaaaaatatcc-aaaaaataaagtaaagaata 59
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 544 caaaggttctaacttataaacgcatac-aaaaaatatccaaaaaaataaagtaaagaata 486

                                                                       
Query: 60  ttaagatacagtttaggttggtcccagtagcacaggctccaaactgctctgacaactgag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 485 ttaagatacagtttaggttggtcccagtagcacaggctccaaactgctctgacaattgag 426

                                                                       
Query: 120 gtgtgggggtttgcatgttcaagggcagcttaaacacttaatgaaactactttcttaaaa 179
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 425 gtgtgggggtttgcgtgttcaagggcagcttaaacacttaatgaaactactttcttcaaa 366

                                                                       
Query: 180 caaaaaaataaaaatagggttgcagatgtagttcagtactgaaatctctaccatgtgcaa 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caaaaaaataaaaatagggttacagatgtagttcagtactgaaatctctaccatgtgcaa 306

                                                                       
Query: 240 gaccctatattcaactcccagtacgacaaagaataaattgataaaacaaatgtagccata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaccctatattcaactcccagtacgacaaagaataaattgataaaacaaatgtagccata 246

                                                                       
Query: 300 tattaaatgaggtgccctcaaaaaaggcaaaatgactgaacctgt----gacagacagac 355
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 245 tattaaatgaggtgccctcaaaaaaggcaaaatgactgaacctgtgacagacagacagac 186

                                                                       
Query: 356 agacagacagagaaaacacgaacacattccctaaatccctaaatgttcatttgcatagta 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agacagacagagaaaacacgaacacattccctaaatccctaaatgttcatttgcatagta 126

                                                                       
Query: 416 agccagatagacaagtacgaaaaaatataaaatgatttttttaagccataatggaatcta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agccagatagacaagtacgaaaaaatataaaatgatttttttaagccataatggaatcta 66

                                                                       
Query: 476 ctcaagtgtaacaacagggccaagtccagccaggaccacacagcaagaccatgtctcaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ctcaagtgtaacaacagggccaagtccagccaggaccacacagcaagaccatgtctcaaa 6

                
Query: 536 agaaa 540
           |||||
Sbjct: 5   agaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)