BAC Information

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BAC

Clone NameMSMg01-444F10
Chromosome10 (Build37)
Map Location 108,867,330 - 108,867,582
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502, LOC100042506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F10.T7 (MSMg01no444_f10.b1)MSMg01-444F10.TJ (MSMg01no444_f10.g1)
ACCAG533529AG533530
length786741
length of high quality
(start - end)
253 (72 - 324)498 (79 - 576)
definitionCHROMAT_FILE: MSMg01no444_f10.b1 PHD_FILE: MSMg01no444_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005CHROMAT_FILE: MSMg01no444_f10.g1 PHD_FILE: MSMg01no444_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAAACGNGG
AATTCCAAGGATTCTTTGCCACTACCATCTCCAATCATTCAACGTGGAGA
GTAAGGTAACATAGACAGGTTTATAGACAGATTGCTTAATAGAAAAAGGG
TCATAGTTTTATTTCTATTATATATGATATAAATTCTGGAATGTTTGAAA
TATTAAAAAAACTAAATAGTCATCCAAAAATAAGTAAAATATATAGAGGA
GATTATTATAAGTAAAGTAGAACTATAATTTCTATTTTGAATAAAAATTA
ATGGATTAGGAGATAAAATTATGTTTTTATTTGAAACACATTTATAGTGT
GTAGAATATTTTTATTGATAATAAATTTTTATACAATAGATTCTGATCAC
AGTTTCTTCTCTCTCATCCCCTCATAAATTTGTAATTAAATTTCGAAAAT
TGGACTGATCTAAAATCTCCAGAGAATATTACCAGAGAATGTCTAAGATG
AATGTCATAGTGACTGTAATATGGTGAACAGGTCTCTGTGGTGTTTTGAA
TTACAATGGTTTTGTTTTATTTTCCTATGCCCTCTGGTCTATTCTGCTTT
TTCCTTTCGGCCCTTTATCTTTTTTTACTCTCCCTCCTCACCCTTGTTTT
TTTTTCACACCTTGTTTTTTTTTTTTCTTTTTCCTCCTTCTTCTTCCCCT
TTTTTCCCACCTTTCACCCCCCTCCTTCTACTCTTTGTCCCATTTTTTAT
TATTTATTGCTCCCTAGTATCAGTTATTTTTTTTTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACCTCAC
TTTTAAAATTGGGTTATTTGTTTTCTTGATATATCATTCTTTGGATAGTA
GCCATCTGTCATATATGTATTTAGTGAAAATCTTTTCCGATCCCATTGGC
TGCAGCTTTGTCTGAATGACAAAGTCCTTTGCTCTGCAGAAGCTCTTCAG
TAAATGAGGTCCCATTTACTAACTGTTGATCTTAGTACCTGTGTTTATGG
TATTCAGTTCAGAAAGTCTTTTCCCGTGCTAATGACTTCAAGGATATTTC
CCACAACCTCTTTTGTTAGATTCAGTGTATCTGGCCTTATATTTATATCT
TTGATCCATTTGGAGTTTTGTGTAGGGTGACAACTATATATCGATTTTGG
TTTCTTCTACATGCAGAGTTCTGGATTGACCAGCACTGTTTGTTGAAGAG
GCTGTTTTCTTTCCCATGTGTATTTCTGGCTCCTTTATTAAAAACCAGAT
TATGGATTATATTAATCCTGCTGATCCATGAGCAAAGGAGATTTTTCCAT
CTTATGATATCTTCTTCAGTTTCTTAAGTATGAAGGCTCCTGAATTTTCC
GAAATAATTTTGGATCCCACATAACTGGAAGTGGTTATCAGCTGTTGGGA
TTTCGTGGTAAAATTCTTATGATCGCTTAAACTCGCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f10.b1 MSMg01no444_f10.b1 CHROMAT_FILE:
MSMg01no444_f10.b1 PHD_FILE: MSMg01no444_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:13 2005
         (253 letters)



>mm_chr10_108867130_108867782
          Length = 653

 Score =  458 bits (237), Expect = e-133
 Identities = 249/253 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaccatctccaatcattcaacgtggagagtaaggtaacatagacaggtttatagacaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ctaccatctccaatcattcaacgtggagagtaaggtaacatagacaggtagatagacaga 260

                                                                       
Query: 61  ttgcttaatagaaaaagggtcatagttttatttctattatatatgatataaattctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttaatagaaaaagggtcatagttttatttctattatatatgatataaattctggaa 320

                                                                       
Query: 121 tgtttgaaatattaaaaaaactaaatagtcatccaaaaataagtaaaatatatagaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgaaatattaaaaaaactaaatagtcatccaaaaataagtaaaatatatagaggag 380

                                                                       
Query: 181 attattataagtaaagtagaactataatttctattttgaataaaaattaatggattagga 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaaataagtaaagtagaactataatttctattttgaataaaaattaatggattagga 440

                        
Query: 241 gataaaattatgt 253
           |||||||||||||
Sbjct: 441 gataaaattatgt 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)