BAC Information

Click to search

BAC

Clone NameMSMg01-444N21
Chromosome10 (Build37)
Map Location 15,453,916 - 15,454,209
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666904, Nmbr, LOC666917, LOC637043, LOC100039492
Downstream geneLOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444N21.T7 (MSMg01no444_n21.b1)MSMg01-444N21.TJ (MSMg01no444_n21.g1)
ACCAG533933AG533934
length761761
length of high quality
(start - end)
507 (46 - 552)296 (81 - 376)
definitionCHROMAT_FILE: MSMg01no444_n21.b1 PHD_FILE: MSMg01no444_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:54 2005CHROMAT_FILE: MSMg01no444_n21.g1 PHD_FILE: MSMg01no444_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATATTTCCGCAAAACGATGCATTTGGAGGATATTATCCTA
AGTGAGGTAACCCAAACACAAAAGAACACACATGATATGCACTCACTGAT
AAGTGGATATTAGCCCAGAAATTCAGAATATCCAAGATACAATTTGCAAA
ACACATGAAACTCAAGAAGGAAGACCAAAGTGTGGATACTTAGCTCCTTC
TTAGAAAGTGGAACAAAATACCCGTGGAAGGAGTTACAGAGACAGAGATC
ACAGCTGAGATAGAAGGAAAGACCATCCAGAGACTGCCCCACCCAGGAAT
CCATCCCATATACAACCATCAAACTCAGACACTATTGCATATGCCAGAAA
GATTTTCCTGACAGGACCCTGACATAACTTTCTCTTGTGAGGCTATGCCA
ATGCCTGACAAATACAGAAGTGGGTTCTCACAGTCATCTATTTGATGGAA
CACATGGCCGCTGATGAAGGAGCTAAAGAAAGAACCCAAGGAGCTGAAGG
GGTCTGCTACCCTATAGGAAGAACTAACCAGTACCCCACGGAGCTGTGTC
TCTAGCTGCATATGGAGCAGAGGATGGCCCTAATTGGGCCCCCACGGGAG
GAGAAGTTCCTTGGCTTTGCATATGGGCTAAGCGCCCCCTATAGGGCAAT
GCCCGCGCCCCGAAATTGCGACCGGGTTGGTTTCGGCGCATTTGTTTTTT
TTCCCGCCCTN
AAAACCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTGTGCAATCTAAAG
AAGCAATCAGCAGGCAAAGCAGAGACCCTCAACACTTGCAAGACAATTTC
CTTTTGTCTACAGTGTTCACAGTAAACTAGGTGCAGGTTACTCTAGAAAT
ATGTAAATGAAGCCACAGTGTTGGATTGCTTCTGAGTTCAGAATTTCCAT
TTACTATTTAAGCCATCTCTTGGAAGTGGTAAGTAAATATTTAATAGATT
GTAATGATATTACAATAATTANATCAGTTTGATTTCAACAATACTTGAGT
GTGTATGGGGGGGGGTATGTATGCCNNTNTNNTNNTTTTTTNNTCNTNTT
TNTTNNTTTTTNNTTTTTTTTTTTTNCTCTCTTTTTTTCTCTCCTTTCTT
TCTCTCTCCTTTTTTTCCTTCCTCTCCCCTCCTCTCCTTCTTTTCCTCCC
TCTCCCTTTTTTTTTTCCCCCCCCTCCCTCCTCCCCTCCTTTTTTTTCTC
TTTCTCTCTTCTTCCTCCTTTTTTCCTCCTCCCTTTTTTCTTTCCCTTTC
CCCTCCTTTTTTTTCCCCCCCTCCCCTCTTCCNCCTTCTTTCTCCCTTCT
TCCCTTCCTTCTCCCCCCTTCCCCTTTTTTCTTTTTTTTTCTCTCCCCCC
TTCCCCCTTTTTTTTTTTTCTTTCTTCCTCTCTCCTCTTTTCTCCCTTTT
CTTTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_n21.g1 MSMg01no444_n21.g1 CHROMAT_FILE:
MSMg01no444_n21.g1 PHD_FILE: MSMg01no444_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:54 2005
         (296 letters)



>mm_chr10_15453716_15454412
          Length = 697

 Score =  524 bits (271), Expect = e-153
 Identities = 288/294 (97%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttttgtgcaatctaaagaagcaatcagcaggcaaagcagagaccctcaacacttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttttgtgcaatctaaagaagcaatcagcaggcaaagcagagaccctcaacacttgca 260

                                                                       
Query: 61  agacaatttccttttgtctacagtgttcacagtaaactaggtgcaggttactctagaaat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 agacaatttccttttgtctacagtgttcacagtaaactatgtgcaggttactctagaaat 320

                                                                       
Query: 121 atgtaaatgaagccacagtgttggattgcttctgagttcagaatttccatttactattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaaatgaagccacagtgttggattgcttctgagttcagaatttccatttactattta 380

                                                                       
Query: 181 agccatctcttggaagtggtaagtaaatatttaatagattgtaatgatattacaataatt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccatctcttggaagttgtaagtaaatatttaatagattgtaatgatattacaataatt 440

                                                                 
Query: 241 anatcagtttgatttcaacaatacttgagtgtgtatg-ggggggggtatgtatg 293
           | |||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 441 atatcagtttgatttcaacaatacttaagtgtgtgtgtggggggggtatgtatg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space:   197456
Effective search space used:   197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)