BAC Information

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BAC

Clone NameMSMg01-445D24
Chromosome10 (Build37)
Map Location 62,926,087 - 62,926,493
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneVps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D24.T7 (MSMg01no445_d24.b1)MSMg01-445D24.TJ (MSMg01no445_d24.g1)
ACCAG534225AG534226
length740773
length of high quality
(start - end)
238 (68 - 305)408 (67 - 474)
definitionCHROMAT_FILE: MSMg01no445_d24.b1 PHD_FILE: MSMg01no445_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:23 2005CHROMAT_FILE: MSMg01no445_d24.g1 PHD_FILE: MSMg01no445_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATAGTTCCAAAAACGCGCGGATTCTCACC
TGAGTAACAATGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGTCCAAGTTCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTATTGGTGTTTCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAATTGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAATGGTACTCACAC
AATATGTACTCTCTGATAAGTGGATATTAGCTCCAAACCTATTTTTTTTT
TTATATTGATACAATTTTCTACACACTTGATATTCATTAATTATGACCAC
TGATGTGTGGACCCTATGCCCCTCTTAAGAATGGGGAACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGAGAGCTGCCTCCTGAATGCTTGAGTTAATG
GCAAATGCTGCCACATTTAGTATTGATAAATCTGTAGTCACTTCAGTCGG
TATAAAGGAGACTCATACTTTTTGTTGCAGTCTGTTGGAGGGTCTCTGAA
TGCTGAGGCAATGCCTGCTGTAAGCAATAACTGTGATCTGTAGAGGCAGC
ACCAGGTAACTCTCCAGGTTGATCTTCAGGCTGAAAAACTTCTATAAATA
TTTGTTGGCCAGTTGTATTTCTTTTTATCTAAATTCCCATTATGAATTAT
CAGCCATGTTCTTTTACTGAGTCCTAAAATAAATTCTACCATAACGAACA
AAATTAGATTATTGTGCTTTTTCCCCCTCAAAATTAGTTGTTCACTTTTT
GACTTTTATTTTTAAGAAATTACATATATAAAGTAAAATATTATTGTAGT
CAGGAATCAAAATTTCTTTTATTTTTTTAAGAATTATTTAATGAAATTTA
TTTATTTTCTTTCCATGTGGGGTTTTGGCACATGTATATCTGTTTCTTTA
CTGAATGCTTGATATCATAACACCCCCAAAAAAAAACTGGGCGCCCCGGA
TTAGTTTTTTTACAACCTCTCTGTTTTCCTATCTGGGAGCGGGAGAGTCC
ACCACTCGTTCTCTTTTCTTATTTCTAAATTTTCTTTTTATCGTTTTATC
TCCCTTTCTTCTATCCTGCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d24.g1 MSMg01no445_d24.g1 CHROMAT_FILE:
MSMg01no445_d24.g1 PHD_FILE: MSMg01no445_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:23 2005
         (408 letters)



>mm_chr10_62925887_62926693
          Length = 807

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagagctgcctcctgaatgcttgagttaatggcaaatgctgccacatttagtattga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acagagagctgcctcctgaatgcttgagttagtggcaaatgctgccacatttagtattga 260

                                                                       
Query: 61  taaatctgtagtcacttcagtcggtataaaggagactcatactttttgttgcagtctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatctgtagtcacttcagtcggtataaaggagactcatactttttgttgcagtctgtt 320

                                                                       
Query: 121 ggagggtctctgaatgctgaggcaatgcctgctgtaagcaataactgtgatctgtagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagggtctctgaatgctgaggcaatgcctgctgtaagcaataactgtgatctgtagagg 380

                                                                       
Query: 181 cagcaccaggtaactctccaggttgatcttcaggctgaaaaacttctataaatatttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaccaggtaactctccaggttgatcttcaggctgaaaaacttctataaatatttgtt 440

                                                                       
Query: 241 ggccagttgtatttctttttatctaaattcccattatgaattatcagccatgttctttta 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggccagttgtatttctttttatctaaattcccattatgaattatcatccatgttctttta 500

                                                                       
Query: 301 ctgagtcctaaaataaattctaccataacgaacaaaattagattattgtgctttttcccc 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ctgagtcctaaaataaattctaccataatgaacaaaattagattattgtgctttttcccc 560

                                                           
Query: 361 ctcaaaattagttgttcactttttgacttttatttttaagaaattaca 408
           ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 561 ctcaaaattagttgtacactttt-gacttttatttttaagaaattaca 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space:   318402
Effective search space used:   318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)