BAC Information

Click to search

BAC

Clone NameMSMg01-446A08
Chromosome10 (Build37)
Map Location 14,413,907 - 14,414,157
singlet/doubletsinglet
Overlap geneVta1
Upstream geneAig1, EG666859, Hivep2, Gpr126, LOC100039571, LOC100039409
Downstream geneD230044M03Rik, EG666904, Nmbr, LOC666917, LOC637043, LOC100039492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446A08.T7 (MSMg01no446_a08.b1)MSMg01-446A08.TJ (MSMg01no446_a08.g1)
ACCAG534814AG534815
length725795
length of high quality
(start - end)
251 (63 - 313)262 (64 - 325)
definitionCHROMAT_FILE: MSMg01no446_a08.b1 PHD_FILE: MSMg01no446_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:26 2005CHROMAT_FILE: MSMg01no446_a08.g1 PHD_FILE: MSMg01no446_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAATCCGCGGAATTCTGTC
AGTCTTTCAATAATATTTATAATATAATTAATAAGTATTTCTTGTTTATT
AGTAACCATTATAAAGTTTGCATTAAGGCATTATAGTCTGCCATCATACA
TTATTTAACTTTACACATAAAGTATTTATTGTTTTTTCCTGCCTTTTCCC
TATCGTTGGTATAGTGTTCATACATATGTCATATACCCTGTATTTTTATG
TTACATTTTATTTTATATATTTTATATTTTTACTTTTAACCATTATTCTA
TAAAGTGAGAAGCCTTATTTTCCTGTGTTTGACCACATAAGTACCATTTT
CACCAGTCTCCTTCCTTTTTGAATGATGGCATTCCTTTTCTCTCCCAGAA
CTCTGTCTGCCATTTCCTTCTTCATTCCATGCTGAGATTACTTCATCCTC
TGCTGCAGGAAGTGAGCTTTCACCTCAGCTTTTCTTTTTGACAGATGCAC
TTGCAGTGTACTGGACTTGACAGTTTGTTTTTCCTTCCACCTCCTTTTGC
AGACCTTTCTGGCTGGATTTCTTCATTGGAATCTAGCCCCTTGTAAGCTA
GACACTTGACACTTTCCTGGACAACATAGGCTGCCTTTTACGTTGTTTGT
CTTTCTTCTTTTCTAAGAACGCCCCCTCCCCGGTTCATTTTGATGCTATT
CCCACATGCCATTTATTCTTCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXNATTCAGGAATTCTCACCAGCATGGCAGCCTAAACATGACCTGAA
CAAGGATAAGACCAGCACATGCTAATCTGAATGGAGGGAAGTTTATGAGG
CCTCAACCCTACACAACCAACTAAAGAAAACTAAGGGATGTTGAGAGCAG
GAGAAATAGGTTTCCCCAGAGTGAAGCATACCAATGGCTATCTGATACCA
AGTGGTGGGCCCTGAAAACATACAACTAATAGATTGAGGAGGTTGGTGTG
TGTGTGTGCAATGATTTTTTTTTTTGAGGCCAGGAATTTGATAGAGAGCA
TAGGGTTTTTTTACCTATACTTATAACAGCCTATATGGAGCAATATACAG
CACTTATTGACGTCCCTATATCACATATTCATTTTCTTTTTCTACATTTG
CTTTTCCCCTAATTCCCGATTATCCCTCCTGTACACCTTTTTTTACATAA
TTCTCTTCTATTTTTCTCCCTATTATCTTTTTTCCCTTTGTATTCTTTGT
TTCTCTTCAGGCTATTCACCGTCTTCTCTTTTCCCCCTTCTTTCTTATTT
CCTCATCTCTCTTTTATCCCCCCCCCCCTGCTCTTCCTTTTCTTTTCTCC
GTTTATCATCTTCTCCCTTCCTTTTCCATCTCTTATCATATTCTGTTTTC
TCCCGCCTCTCCTTTCCCCTTTCCTTCTTTTATTCCCCTGTCTCTCTTCT
CTCTTCTCTGTTCCTTATAATTTTATTCCCCATTATTGTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_a08.b1 MSMg01no446_a08.b1 CHROMAT_FILE:
MSMg01no446_a08.b1 PHD_FILE: MSMg01no446_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:26 2005
         (251 letters)



>mm_chr10_14413744_14414394
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttataatataattaataagtatttcttgtttattagtaaccattataaagtttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 414 atatttataatataattaataagtatttcttgtttattagtaaccattataaagtttgcg 355

                                                                       
Query: 61  ttaaggcattatagtctgccatcatacattatttaactttacacataaagtatttattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaaggcattatagtctgccatcatacattatttaactttacacataaagtatttattgt 295

                                                                       
Query: 121 tttttcctgccttttccctatcgttggtatagtgttcatacatatgtcatataccctgta 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tttttcctgcctttttcctatcgttggtatagtgttcatacatatgtcatataccctgta 235

                                                                       
Query: 181 tttttatgttacattttattttatatattttatatttttacttttaaccattattctata 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tttttatgttactttttattttatatattttatatttttacttttaaccattattctata 175

                      
Query: 241 aagtgagaagc 251
           |||||||||||
Sbjct: 174 aagtgagaagc 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)